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csiborgtools/README.md

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kNN-CDF implementation (#34) * Rewrite doc * add kNN * edit loading of samples with no init * Add verbosity flag * add KNN submission script * do not make peaked cdf by default * Add submit script * stop ignore sh * Add mass thresholding * Edit gitignore * edits * Space points in logspace * Calculate for all ICs * Update TODO * Add dtype support * Update readme * Update nb
2023-03-31 17:13:41 +00:00
# CSiBORG Analysis
Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO
2022-10-30 20:16:56 +00:00
Update TODO
2022-12-20 12:11:18 +00:00
kNN-CDF implementation (#34) * Rewrite doc * add kNN * edit loading of samples with no init * Add verbosity flag * add KNN submission script * do not make peaked cdf by default * Add submit script * stop ignore sh * Add mass thresholding * Edit gitignore * edits * Space points in logspace * Calculate for all ICs * Update TODO * Add dtype support * Update readme * Update nb
2023-03-31 17:13:41 +00:00
## Project Overlap
- [ ] Calculate the overlap between all 101 IC realisations on DiRAC.
Power spectrum stuff (#16) * add autok1d * update TODO * add basic cross pk * del blank line * fix small bugs * fix loop bug * rm nbs * edit docstring * Update TODO * get rid of verbose flag * take all ICs * attempt better memory * simplify ASCII dump * rm verbose statement to get rid of bugs! * close fortran files * add MAS options * add boxsize setter * Move comment up * paths chagne * Update TODO * Update TODO * Forgotten units in Xpk * Attempt at fixing the distance bug * Update TODO * Update TODO * Remove comment * add summary reader * Update gitignore
2022-12-12 14:42:44 +00:00
Mass enclosed in a sphere calculation (#5) * rename nb * add merge func * rm bug.. * add static methods * save rmin, rmax * add properties for box units * move radial info to the clump * add Npart explicit * move where rmin, rmax obtained * add box cosmo * add __getattr__ * add comments in units * add enclosed spherical mass * rm unused variables * add clump mass setter * add the halo index * add enclosed overdensity * add enclosed_overdensity * simplify loss func * opt result to nan * change Rs to log10 * change back to attribs * add H0 and h props * add setattrs * Remove global constants * move Msuncgs above * add crit density * add dots * add r200c and r500c * add M200 and M500 * make lowercase * output r200, r500, m200, m500 * update TODO * update README * fit NFW only up to r200 * add r178, m178 * add m178, r178 * update TODO
2022-11-01 10:10:54 +00:00
kNN-CDF implementation (#34) * Rewrite doc * add kNN * edit loading of samples with no init * Add verbosity flag * add KNN submission script * do not make peaked cdf by default * Add submit script * stop ignore sh * Add mass thresholding * Edit gitignore * edits * Space points in logspace * Calculate for all ICs * Update TODO * Add dtype support * Update readme * Update nb
2023-03-31 17:13:41 +00:00
## Project Clustering
Joint kNN-CDF calculation (#36) * Add joint kNN CDF * add jointKNN calculation * change sub script * Update readme * update sub * Small changes * comments * update nb * Update submisison script
2023-04-01 10:16:11 +00:00
- [ ] Add uncertainty to the kNN-CDF autocorrelation?
- [ ] Add kNN-CDF differences.
Edit TODO
2023-04-01 10:43:39 +00:00
- [ ] Add reading halo catalogues at higher redshifts.
Joint kNN-CDF calculation (#36) * Add joint kNN CDF * add jointKNN calculation * change sub script * Update readme * update sub * Small changes * comments * update nb * Update submisison script
2023-04-01 10:16:11 +00:00
- [x] Add the joint kNN-CDF calculation.
- [x] Make kNN-CDF more memory friendly if generating many randoms.
Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO
2022-10-30 20:16:56 +00:00
kNN-CDF implementation (#34) * Rewrite doc * add kNN * edit loading of samples with no init * Add verbosity flag * add KNN submission script * do not make peaked cdf by default * Add submit script * stop ignore sh * Add mass thresholding * Edit gitignore * edits * Space points in logspace * Calculate for all ICs * Update TODO * Add dtype support * Update readme * Update nb
2023-03-31 17:13:41 +00:00
## Project Environmental Dependence
- [ ] Add gradient and Hessian of the overdensity field.
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