csiborgtools/scripts/run_split_halos.py

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Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO
2022-10-30 20:16:56 +00:00
# Copyright (C) 2022 Richard Stiskalek
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
"""
Script to split particles into smaller files according to their clump
membership for faster manipulation. Running this will require a lot of memory.
"""
from tqdm import tqdm
from os.path import join
try:
import csiborgtools
except ModuleNotFoundError:
import sys
sys.path.append("../")
import csiborgtools
import utils
Nsims = [9844]
Nsnap = 1016
partcols = ["x", "y", "z", "M", "level"]
dumpdir = join(utils.dumpdir, "temp")
for Nsim in tqdm(Nsims):
simpath = csiborgtools.io.get_sim_path(Nsim)
# Load the clumps, particles' clump IDs and particles.
clumps = csiborgtools.io.read_clumps(Nsnap, simpath)
particle_clumps = csiborgtools.io.read_clumpid(Nsnap, simpath,
verbose=False)
particles = csiborgtools.io.read_particle(partcols, Nsnap, simpath,
verbose=False)
# Drop all particles whose clump index is 0 (not assigned to any halo)
particle_clumps, particles = csiborgtools.io.drop_zero_indx(
particle_clumps, particles)
# Dump it!
csiborgtools.fits.dump_split_particles(particles, particle_clumps, clumps,
utils.Nsplits, dumpdir, Nsim, Nsnap,
verbose=False)
print("All finished!")