csiborgtools/README.md

# CSiBORG analysis tools :dart:

## TODO :scroll:
- [ ] Calculate $\left\{M_{\rm vir}, R_{\rm vir}, c\right\}$ from $\left\{R_s, \rho_0, \ldots \right\}$
- [ ] Calculate $M_{\rm 500c}$ by sphere shrinking
- [ ] Calculate the cross-correlation in CSiBORG. Should see the scale of the constraints?
- [ ] Improve file naming system


## Open questions :bulb:
- Get uncertainty on the fitted $R_{\rm s}$? If so get this directly from JAX.
Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO 2022-10-30 20:16:56 +00:00			`# CSiBORG analysis tools :dart:`

			`## TODO :scroll:`
			`- [ ] Calculate $\left\{M_{\rm vir}, R_{\rm vir}, c\right\}$ from $\left\{R_s, \rho_0, \ldots \right\}$`
			`- [ ] Calculate $M_{\rm 500c}$ by sphere shrinking`
			`- [ ] Calculate the cross-correlation in CSiBORG. Should see the scale of the constraints?`
Update TODO 2022-10-30 20:21:48 +00:00			`- [ ] Improve file naming system`
Within halo work and NFW fit (#4) * add listing of snapshots * change distance to comoving * ignore cp files * rename nb * add str to list * add NFW profile shapes * add fits imports * Rename to Nsnap * in clumps_read only select props * make clumpid int * expand doc * add import * edit readme * distribute halos * add profile & posterior * add import * add import * add documentation * add rvs and init guess * update todo * update nb * add file * return end index too * change clump_ids format to int32 * skeleton of dump particle * update nb * add func to drop 0 clump indxs parts * add import * add halo dump * switch to float32 * Update TODO * update TODO * add func that loads a split * add halo object * Rename to clump * make post work with a clump * add optimiser * add Nsplits * ignore submission scripts * ignore .out * add dumppath * add job splitting * add split halos script * rename file * renaem files * rm file * rename imports * edit desc * add pick clump * add number of particles * update TODO * update todo * add script * add dumping * change dumpdir structure * change dumpdir * add import * Remove tqdm * Increase the number of splits * rm shuffle option * Change to remove split * add emojis * fix part counts in splits * change num of splits * rm with particle cut * keep splits * fit only if 10 part and more * add min distance * rm warning about not set vels * update TODO * calculate rho0 too * add results collection * add import * add func to combine splits * update TODO * add extract cols * update nb * update TODO 2022-10-30 20:16:56 +00:00

			`## Open questions :bulb:`
			`- Get uncertainty on the fitted $R_{\rm s}$? If so get this directly from JAX.`