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|a| is the main component of the Bayesian Large Scale Structure inference pipeline. The present version of the ARES framework is 2.1. Please consult :ref:`CHANGES overview` for an overview of the different improvements over the different versions.

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|a| is written in C++14 and has been parallelized with OpenMP and MPI. It currently compiles with major compilers (gcc, intel, clang).

Table of contents

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.. toctree::
   :maxdepth: 1
   :caption: Theory

   theory/ARES
   theory/BORG
   theory/ARES&BORG_FFT_normalization

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.. toctree::
   :maxdepth: 1
   :caption: User documentation

   changes
   user/building
   user/inputs
   user/outputs
   user/running
   user/postprocessing
   user/extras
   user/clusters

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.. toctree::
   :maxdepth: 1
   :caption: Developer documentation

   developer/development_with_git
   developer/code_architecture
   developer/life_cycles_of_objects
   developer/ares_modules
   developer/code_tutorials
   developer/contributing_to_this_documentation
   developer/copyright_and_authorship

Citing

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.. sectionauthor:: Florent Leclercq (last update: 20 June 2023)

The following section gives the references for the |ares|, |hades|, and |borg| algorithms and codes (including their direct application to real data, but excluding further scientific exploitation). For the full list of publications from the Aquila consortium, please check the Aquila website.

ARES

References for the |ares| algorithm (linear data model, Wiener filtering with Gibbs sampling/messenger field) are the following papers:

HADES

References for the |hades| algorithm (log-normal data model, Hamiltonian Monte Carlo sampling, photometric redshift inference) are the following papers:

BORG

Methodological papers that shall be cited when referring to the |borg| algorithm (inference with a structure formation model and Hamiltonian Monte Carlo) are the following:

Data application papers of |borg| are the following:

Additional papers extend the |borg| algorithm and shall be cited depending on the context. The list includes (but may not be limited to):

Acknowledgements

This work has been funded by the following grants and institutions over the years:

  • The DFG cluster of excellence "Origin and Structure of the Universe" (http://www.universe-cluster.de).
  • Institut Lagrange de Paris (grant ANR-10-LABX-63, http://ilp.upmc.fr) within the context of the Idex SUPER subsidized by the French government through the Agence Nationale de la Recherche (ANR-11-IDEX-0004-02).
  • BIG4 (ANR-16-CE23-0002) (https://big4.iap.fr)
  • The "Programme National de Cosmologie et Galaxies" (PNCG, CNRS/INSU)
  • Through the grant code ORIGIN, it has received support from the "Domaine d'Interet Majeur (DIM) Astrophysique et Conditions d'Apparitions de la Vie (ACAV)" from Ile-de-France region.
  • The Starting Grant (ERC-2015-STG 678652) "GrInflaGal" of the European Research Council.

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.. toctree-filt::
   :maxdepth: 1
   :caption: Python reference documentation

   :aquila:pythonref.rst

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