minor changes

analysis/slices.py

@@ -82,6 +82,19 @@ def plot_imshow_with_reference( data_list,
         for i, data in enumerate(data_list):
             axes[1, i].text(0.5, 0.9, f"Score: {score(data, reference):.2e}", fontsize=10, transform=axes[1, i].transAxes, color='white')
         # plt.tight_layout()
+    else:
+
+        if len(data_list) == 1:
+            data_list = data_list[0]
+            im = axes.imshow(data_list, cmap=cmap, origin='lower', vmin=vmin, vmax=vmax)
+            axes.set_title(titles[0], fontsize=fs_titles)
+            axes.set_xticks(ticks[0])
+            axes.set_yticks(ticks[0])
+            axes.set_xticklabels(tick_labels[0])
+            axes.set_yticklabels(tick_labels[0])
+            axes.set_xlabel('Mpc/h')
+            fig.colorbar(im, ax=axes, orientation='vertical')
+
         else:
             for i, data in enumerate(data_list):
                 im = axes[i].imshow(data, cmap=cmap, origin='lower', vmin=vmin, vmax=vmax)

cosmo_params.py

@@ -19,7 +19,7 @@ def register_arguments_cosmo(parser:ArgumentParser):
     parser.add_argument("--m_nu3", type=float, default=0.0, help="Mass of the third neutrino species.")
     parser.add_argument("--w_0", type=float, default=-1.0, help="Dark energy equation of state parameter.")
     parser.add_argument("--w_a", type=float, default=0.0, help="Dark energy equation of state parameter.")
-    parser.add_argument("--fnl", type=float, default=100.0, help="Local non-Gaussianity parameter.")
+    parser.add_argument("--fnl", type=float, default=0.0, help="Local non-Gaussianity parameter.")
     parser.add_argument("--gnl", type=float, default=0.0, help="Equilateral non-Gaussianity parameter.")
 
 
@@ -84,7 +84,7 @@ cosmo_defaults = {
         "m_nu3": 0.0,
         "w_0": -1.0,
         "w_a": 0.0,
-        "fnl": 100.0,
+        "fnl": 0.0,
         "gnl": 0.0,
         "k_max":10.0, 
         "tau_reio":0.06,

main.py

@@ -136,7 +136,7 @@ def main(parsed_args):
             from parameters_card import parse_arguments_card, main_parameter_card
             from timestepping import main_timestepping
             from ICs import main_ICs
-            from scola import main_scola, main_pre_scola, main_post_scola
+            from scola import main_scola, main_pre_scola, main_post_scola, have_all_tiles
 
             card_dict = main_parameter_card(parsed_args)
 
@@ -177,7 +177,7 @@ def main(parsed_args):
             
             print_message("Running sCOLA.", 1, "control", verbose=parsed_args.verbose)
             main_scola(parsed_args)
-            if parsed_args.execution == "slurm":
+            if parsed_args.execution == "slurm" and not have_all_tiles(parsed_args):
                 from tqdm import tqdm
                 from low_level import progress_bar_from_logfile
                 for b in tqdm(range(1,parsed_args.N_tiles**3+1), desc="sCOLA", unit="box", disable=(parsed_args.verbose==0)):

monofonic.py

@@ -9,6 +9,7 @@ def main_monofonic(parsed_args):
     
     print_starting_module("monofonic", verbose=parsed_args.verbose)
     monofonic_dict=main_parameters_monofonic(parsed_args)
+    # raise SystemExit # Exit the program after writing the config file to avoid running monofonic
 
     if parsed_args.execution == "local":
         print_message("Running monofonic in local mode.", 1, "monofonic", verbose=parsed_args.verbose)

parameters_monofonic.py

@@ -140,7 +140,6 @@ def main_parameters_monofonic(parsed_args):
         return monofonic_dict
     create_monofonic_config(monofonic_dict["config"], get_config_from_dict(monofonic_dict))
     print_message(f"Configuration file written to {monofonic_dict["config"]}", 2, "monofonic", verbose=parsed_args.verbose)
-    
     return monofonic_dict