Initial commit: v0.1.0

submit/step0a.sh

@@ -0,0 +1,44 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+
+export OMP_NUM_THREADS=8
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step0a.py" \
+    --wd_ext dev/ \
+    --name run1 \
+    --size 64 \
+    --Np0 64 \
+    --Npm0 64 \
+    --L 3600 \
+    --S 32 \
+    --Pinit 50 \
+    --Nnorm 2 \
+    --total_steps 10 \
+    --sim_params "custom19COLA20" \
+    --aa 0.05 0.1 0.4 1 \
+    --Ne 150 \
+    --Ns 3 \
+    --OUTDIR $SELFISYS_OUTPUT_PATH \
+    --radial_selection "multiple_lognormal" \
+    --selection_params 0.1150 0.1492 0.1818 0.1500 0.4925 0.8182 1 1 1 \
+    --survey_mask_path $SELFISYS_OUTPUT_PATH"expl_notebooks/surveymask/raw_mask_N64.npy" \
+    --lin_bias 1.47 1.99 2.32 \
+    --prior "planck2018" \
+    --nsamples_prior 10000 \
+    --noise 0.1 \
+    --force True
+
+exit 0

submit/step0b.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+ii_array=-1
+# ii_array=( $(seq 0 1 ) )
+# ii_array=( $(seq 0 9 ) )
+
+export OMP_NUM_THREADS=8
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step0b.py" \
+    --pool_path $SELFISYS_OUTPUT_PATH"dev/643600502/run1/data/" \
+    --ii ${ii_array[@]} \
+    --npar 1 \
+    --force False
+
+exit 0

submit/step0c.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+
+export OMP_NUM_THREADS=8
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step0c.py" \
+    --wd $SELFISYS_OUTPUT_PATH"dev/643600502/run1/" \
+    --npar_norm 1 \
+    --survey_mask_path $SELFISYS_OUTPUT_PATH"expl_notebooks/surveymask/raw_mask_N64.npy" \
+    --force False
+
+exit 0

submit/step0d.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+export OMP_NUM_THREADS=8
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step0d.py" \
+    --wd $SELFISYS_OUTPUT_PATH"dev/643600502/run1/" \
+    --survey_mask_path $SELFISYS_OUTPUT_PATH"expl_notebooks/surveymask/raw_mask_N64.npy" \
+    --name_obs obs \
+    --reset_window_function True \
+    --force_obs True
+
+exit 0

submit/step0e.sh

@@ -0,0 +1,27 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+export OMP_NUM_THREADS=1
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step0e.py" \
+    --wd $SELFISYS_OUTPUT_PATH"dev/643600502/run1/" \
+    --N_THREADS 8 \
+    --prior "planck2018" \
+    --nsamples_prior 100 \
+    --survey_mask_path $SELFISYS_OUTPUT_PATH"expl_notebooks/surveymask/raw_mask_N64.npy" \
+    --name_obs obs \
+    --force_recompute_prior False
+
+exit 0

submit/step1.sh

@@ -0,0 +1,36 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+# Run the Simbelmynë simulations at expansion point (all sims if
+# pp_array=-1, selected sims otherwise).
+
+dir_array=0
+
+pp_array=-1
+# pp_array=( $(seq 0 50 ) )
+# pp_array=( $(seq 495 499 ) )
+
+export OMP_NUM_THREADS=1 # number of threads per process e.g. number of
+                         # threads per Simbelmynë simulation
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step1_2.py" \
+    --pool_path $SELFISYS_OUTPUT_PATH"dev/643600502/run1/pool/" \
+    --directions ${dir_array[@]} \
+    --pp ${pp_array[@]} \
+    --Npop 3 \
+    --npar 8 \
+    --force True
+
+exit 0

submit/step2.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+# Run the Simbelmynë simulations in the directions dir_array of the
+# parameter space, (all sims if pp_array=-1, selected sims otherwise).
+
+dir_array=( $(seq 1 32 ) )
+# dir_array=( $(seq 62 64 ) )
+# dir_array=( $(seq 1 64 ) )
+
+pp_array=-1
+# pp_array=( $(seq 0 1 ) )
+# pp_array=( $(seq 0 9 ) )
+
+export OMP_NUM_THREADS=1
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step1_2.py" \
+    --pool_path $SELFISYS_OUTPUT_PATH"dev/643600502/run1/pool/" \
+    --directions ${dir_array[@]} \
+    --pp ${pp_array[@]} \
+    --Npop 3 \
+    --npar 8 \
+    --force True
+
+exit 0

submit/step3.sh

@@ -0,0 +1,51 @@
+#!/bin/bash
+# ----------------------------------------------------------------------
+# Copyright (C) 2024 Tristan Hoellinger
+# Distributed under the GNU General Public License v3.0 (GPLv3).
+# See the LICENSE file in the root directory for details.
+# SPDX-License-Identifier: GPL-3.0-or-later
+# ----------------------------------------------------------------------
+
+# Author: Tristan Hoellinger
+# Version: 0.1
+# Date: 2024
+# License: GPLv3
+
+eval "$(conda shell.bash hook)"
+conda activate simbel
+
+# Notes:
+# - One shall use "recompute_mocks True" when running step3 for the
+#   first time within a given run.
+# - Afterwards, one can, again, use "recompute_mocks True" for
+#   recomputing the mocks with a misspecified model.
+
+export OMP_NUM_THREADS=1
+python $SELFISYS_ROOT_PATH"src/selfisys/pipeline/step3.py" \
+    --wd $SELFISYS_OUTPUT_PATH"dev/643600502/run1/" \
+    --N_THREADS 8 \
+    --N_THREADS_PRIOR 8 \
+    --prior "planck2018" \
+    --nsamples_prior 1000 \
+    --survey_mask_path $SELFISYS_OUTPUT_PATH"expl_notebooks/surveymask/raw_mask_N64.npy" \
+    --params_obs None \
+    --name_obs obs \
+    --force_obs False \
+    --recompute_obs_mock False \
+    --reset_window_function True \
+    --selection_params 0.1150 0.1492 0.1818 0.1500 0.4925 0.8182 1 1 1 \
+    --Ne 150 \
+    --Ns 3 \
+    --prefix_mocks None \
+    --force_recompute_prior False \
+    --lin_bias 1.47 1.99 2.32 \
+    --recompute_mocks True \
+    --perform_score_compression True \
+    --force_score_compression False
+
+    # --lin_bias 1.47 1.99 2.32 \
+    # --recompute_mocks True \
+
+    # --noise_dbg 0.1 \
+
+exit 0