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https://bitbucket.org/cosmicvoids/vide_public.git
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84 lines
2.8 KiB
Python
Executable file
84 lines
2.8 KiB
Python
Executable file
#!/usr/bin/env python
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#+
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# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/mergerTree.py
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# Copyright (C) 2010-2013 Guilhem Lavaux
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# Copyright (C) 2011-2013 P. M. Sutter
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; version 2 of the License.
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#
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#+
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# computes the overlap between two void catalogs
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from void_python_tools.backend import *
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from void_python_tools.plotting import *
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import imp
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import pickle
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import os
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import matplotlib.pyplot as plt
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import numpy as np
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import argparse
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# ------------------------------------------------------------------------------
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parser = argparse.ArgumentParser(description='Analyze.')
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parser.add_argument('--parm', dest='parm', default='datasetsToAnalyze.py',
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help='path to parameter file')
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args = parser.parse_args()
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# ------------------------------------------------------------------------------
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filename = args.parm
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print " Loading parameters from", filename
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if not os.access(filename, os.F_OK):
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print " Cannot find parameter file %s!" % filename
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exit(-1)
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parms = imp.load_source("name", filename)
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globals().update(vars(parms))
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if not os.access(outputDir, os.F_OK):
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os.makedirs(outputDir)
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if not os.access(logDir, os.F_OK):
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os.makedirs(logDir)
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outFileName = outputDir + "/" + "voidOverlap" #+ ".dat"
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with open(workDir+baseSampleDir+"/sample_info.dat", 'rb') as input:
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baseSample = pickle.load(input)
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for (iSample, sampleDir) in enumerate(sampleDirList):
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with open(workDir+sampleDir+"/sample_info.dat", 'rb') as input:
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sample = pickle.load(input)
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print " Working with", sample.fullName, "...",
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sys.stdout.flush()
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sampleName = sample.fullName
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binPath = CTOOLS_PATH+"/analysis/voidOverlap"
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logFile = logDir+"/mergertree_"+baseSample.fullName+"_"+sampleName+".out"
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stepOutputFileName = outFileName + "_" + baseSample.fullName + "_" + \
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sampleName + "_"
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launchVoidOverlap(baseSample, sample, workDir+baseSampleDir,
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workDir+sampleDir, binPath,
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thisDataPortion="central", logFile=logFile,
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continueRun=False, workDir=workDir,
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outputFile=stepOutputFileName,
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#matchMethod="useID")
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matchMethod="prox")
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print " Done!"
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