guilhem_lavaux/vide_public
0
0
Fork 0
mirror of https://bitbucket.org/cosmicvoids/vide_public.git synced 2025-07-04 23:31:12 +00:00
Code Issues Projects Releases Packages Wiki Activity Actions

bug fixed related to different boundary handling procedure. no guarantee that it's correct (yet) but it runs

Browse source
This commit is contained in:
Paul M. Sutter 2024-06-06 00:49:53 +02:00
parent 03c8f773b6
commit dd181da42a
6 changed files with 40 additions and 36 deletions
Download patch file Download diff file Expand all files Collapse all files

14
python_source/vide_pipeline/__main__.py
View file

@ -75,11 +75,11 @@ for sample in dataSampleList:
sampleName = sample.fullName
print(" Working with data set", sampleName, "...")
zobovDir = workDir+"/sample_"+sampleName+"/"
sample.zobovDir = zobovDir
outputDir = workDir+"/sample_"+sampleName+"/"
sample.outputDir = outputDir
if not os.access(zobovDir, os.F_OK):
os.makedirs(zobovDir)
if not os.access(outputDir, os.F_OK):
os.makedirs(outputDir)
# ---------------------------------------------------------------------------
if (startCatalogStage <= 1) and (endCatalogStage >= 1) and not sample.isCombo:
@ -94,7 +94,7 @@ for sample in dataSampleList:
GENERATE_PATH = CTOOLS_PATH+"/prepSimulation"
launchPrep(sample, GENERATE_PATH, workDir=workDir,
inputDataDir=inputDataDir, zobovDir=zobovDir,
inputDataDir=inputDataDir, outputDir=outputDir,
figDir=figDir, logFile=logFile, useComoving=sample.useComoving,
continueRun=continueRun, regenerate=regenerateFlag)
@ -103,7 +103,7 @@ for sample in dataSampleList:
print(" Extracting voids with ZOBOV...", end=' ')
sys.stdout.flush()
launchZobov(sample, ZOBOV_PATH, zobovDir=zobovDir, logDir=logDir,
launchZobov(sample, ZOBOV_PATH, outputDir=outputDir, logDir=logDir,
continueRun=continueRun, numZobovDivisions=numZobovDivisions,
numZobovThreads=numZobovThreads,
mergingThreshold=mergingThreshold)
@ -119,7 +119,7 @@ for sample in dataSampleList:
PRUNE_PATH = CTOOLS_PATH+"/pruneVoids"
launchPrune(sample, PRUNE_PATH,
logFile=logFile, zobovDir=zobovDir,
logFile=logFile, outputDir=outputDir,
useComoving=sample.useComoving, continueRun=continueRun,
mergingThreshold=mergingThreshold,
boundaryTolerance=boundaryTolerance)