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https://bitbucket.org/cosmicvoids/vide_public.git
synced 2025-07-05 07:41:11 +00:00
removed mock particle tracking, since that is no longer used
This commit is contained in:
Paul M. Sutter
parent
fc2d7157f4
commit
d9efa15474
8 changed files with 71 additions and 173 deletions
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@ -116,7 +116,7 @@ double expanFun (double z, void * p) {
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void openFiles(string outputDir, string sampleName,
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string prefix, string dataPortion,
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int mockIndex, int numKept,
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int numPartTot, int numKept,
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FILE** fpZobov, FILE** fpCenters,
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FILE** fpCentersNoCut,
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FILE** fpBarycenter, FILE** fpShapes,
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@ -128,7 +128,7 @@ void closeFiles(FILE* fpZobov, FILE* fpCenters,
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FILE* fpSkyPositions);
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void outputVoids(string outputDir, string sampleName, string prefix,
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string dataPortion, int mockIndex,
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string dataPortion, int numPartTot,
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vector<VOID> voids,
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bool isObservation, double *boxLen,
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bool doTrim, bool doCentralDenCut);
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@ -187,7 +187,7 @@ int main(int argc, char **argv) {
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int i, p, p2, numPartTot, numZonesTot, dummy, iVoid;
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int numVoids, mockIndex;
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int numVoids;
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double tolerance;
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FILE *fp;
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PART *part, *voidPart, *flaggedPart;
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@ -202,7 +202,6 @@ int main(int argc, char **argv) {
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double nearestEdge, redshift;
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char line[500], junkStr[10];
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string outputDir, sampleName, dataPortion, prefix;
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int mask_index;
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double ranges[3][2], boxLen[3], mul;
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double volNorm, radius;
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int clock1, clock2, clock3, clock4;
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@ -213,7 +212,6 @@ int main(int argc, char **argv) {
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gsl_eigen_symmv_workspace *eigw = gsl_eigen_symmv_alloc(3);
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numVoids = args.numVoids_arg;
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mockIndex = args.mockIndex_arg;
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tolerance = args.tolerance_arg;
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clock1 = clock();
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@ -309,9 +307,6 @@ int main(int argc, char **argv) {
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interval = 1.*(clock4 - clock3)/CLOCKS_PER_SEC;
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printf(" Read %d particles (%.2f sec)...\n", numPartTot, interval);
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if (mockIndex == -1) mockIndex = numPartTot;
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// read in desired voids
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clock3 = clock();
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printf(" Loading voids...\n");
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@ -393,12 +388,8 @@ int main(int argc, char **argv) {
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// and volumes
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printf(" Loading particle volumes...\n");
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fp = fopen(args.partVol_arg, "r");
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fread(&mask_index, 1, 4, fp);
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if (mask_index != mockIndex) {
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printf("NON-MATCHING MOCK INDICES!? %d %d\n", mask_index, mockIndex);
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exit(-1);
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}
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for (p = 0; p < mask_index; p++) {
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fread(&numPartTot, 1, 4, fp);
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for (p = 0; p < numPartTot; p++) {
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fread(&temp[0], 1, 4, fp);
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part[p].vol = temp[0];
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}
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@ -408,7 +399,7 @@ int main(int argc, char **argv) {
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printf(" Loading particle edge flags...\n");
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int numFlagged = 0;
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fp = fopen(args.partEdge_arg, "r");
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for (p = 0; p < mask_index; p++) {
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for (p = 0; p < numPartTot; p++) {
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fscanf(fp, "%d", &part[p].edgeFlag);
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if (part[p].edgeFlag > 0) numFlagged++;
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}
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@ -417,7 +408,7 @@ int main(int argc, char **argv) {
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// copy flagged galaxies to separate array for faster processing later
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flaggedPart = (PART *) malloc(numFlagged * sizeof(PART));
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int iFlag = 0;
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for (p = 0; p < mask_index; p++) {
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for (p = 0; p < numPartTot; p++) {
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if (part[p].edgeFlag > 0) {
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flaggedPart[iFlag] = part[p];
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iFlag++;
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@ -428,20 +419,20 @@ int main(int argc, char **argv) {
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// and finally finally adjacencies
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printf(" Loading particle adjacencies...\n");
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fp = fopen(args.partAdj_arg, "r");
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fread(&mask_index, 1, 4, fp);
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if (mask_index != mockIndex) {
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printf("NON-MATCHING MOCK INDICES!? %d %d\n", mask_index, mockIndex);
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fread(&numPartTot, 1, 4, fp);
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if (numPartTot != numPartTot) {
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printf("NON-MATCHING MOCK INDICES!? %d %d\n", numPartTot, numPartTot);
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exit(-1);
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}
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int tempInt;
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for (p = 0; p < mask_index; p++) {
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for (p = 0; p < numPartTot; p++) {
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fread(&tempInt, 1, 4, fp);
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part[p].nadj = tempInt;
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part[p].ncnt = 0;
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if (part[p].nadj > 0)
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part[p].adj = (int *) malloc(part[p].nadj * sizeof(int));
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}
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for (p = 0; p < mask_index; p++) {
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for (p = 0; p < numPartTot; p++) {
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fread(&tempInt, 1, 4, fp);
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int nin = tempInt;
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if (nin > 0) {
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@ -452,7 +443,7 @@ int main(int argc, char **argv) {
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// this bit has been readjusted just in case we are
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// accidentally still linking to mock particles
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//if (tempAdj < mask_index) {
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//if (tempAdj < numPartTot) {
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assert(p < tempAdj);
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//if (part[p].ncnt == part[p].nadj) {
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// printf("OVERFLOW %d\n", p);
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@ -461,7 +452,7 @@ int main(int argc, char **argv) {
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//} else {
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part[p].adj[part[p].ncnt] = tempAdj;
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part[p].ncnt++;
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if (tempAdj < mask_index) {
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if (tempAdj < numPartTot) {
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part[tempAdj].adj[part[tempAdj].ncnt] = p;
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part[tempAdj].ncnt++;
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}
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@ -542,9 +533,8 @@ int main(int argc, char **argv) {
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partID = zones2Parts[zoneID].partIDs[p];
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// something went haywire
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if (partID > mask_index ||
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(part[partID].vol < 1.e-27 && part[partID].vol > 0.)) {
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printf("BAD PART!? %d %d %e", partID, mask_index, part[partID].vol);
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if (part[partID].vol < 1.e-27 && part[partID].vol > 0.) {
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printf("BAD PART!? %d %d %e", partID, numPartTot, part[partID].vol);
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exit(-1);
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}
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@ -567,7 +557,7 @@ int main(int argc, char **argv) {
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//printf("NORMAL!! %d %d %e\n", iVoid, partID, part[partID].vol);
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}
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for (int iAdj = 0; iAdj < part[partID].ncnt; iAdj++) {
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if (part[partID].adj[iAdj] > mockIndex) {
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if (part[partID].adj[iAdj] > numPartTot) {
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printf("CONTAMINATED!! %d %d %d\n", iVoid, partID, iAdj);
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}
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}
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@ -949,7 +939,7 @@ int main(int argc, char **argv) {
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for (int i = 0; i < 2; i++) {
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dataPortion = dataPortions[i];
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outputVoids(outputDir, sampleName, prefix, dataPortion,
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mockIndex,
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numPartTot,
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voids,
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args.isObservation_flag, boxLen, true, true);
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}
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@ -959,7 +949,7 @@ int main(int argc, char **argv) {
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for (int i = 0; i < 2; i++) {
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dataPortion = dataPortions[i];
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outputVoids(outputDir, sampleName, prefix, dataPortion,
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mockIndex,
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numPartTot,
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voids,
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args.isObservation_flag, boxLen, false, false);
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}
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@ -977,14 +967,14 @@ int main(int argc, char **argv) {
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// ----------------------------------------------------------------------------
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void openFiles(string outputDir, string sampleName,
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string prefix, string dataPortion,
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int mockIndex, int numKept,
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int numPartTot, int numKept,
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FILE** fpZobov, FILE** fpCenters,
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FILE** fpBarycenter, FILE** fpShapes,
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FILE** fpExtra,
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FILE** fpSkyPositions) {
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*fpZobov = fopen((outputDir+"/"+prefix+"voidDesc_"+dataPortion+"_"+sampleName).c_str(), "w");
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fprintf(*fpZobov, "%d particles, %d voids.\n", mockIndex, numKept);
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fprintf(*fpZobov, "%d particles, %d voids.\n", numPartTot, numKept);
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fprintf(*fpZobov, "Void# FileVoid# CoreParticle CoreDens ZoneVol Zone#Part Void#Zones VoidVol Void#Part VoidDensContrast VoidProb\n");
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*fpBarycenter = fopen((outputDir+"/"+prefix+"macrocenters_"+dataPortion+"_"+sampleName).c_str(), "w");
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@ -1022,7 +1012,7 @@ void closeFiles(FILE* fpZobov, FILE* fpCenters,
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// ----------------------------------------------------------------------------
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void outputVoids(string outputDir, string sampleName, string prefix,
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string dataPortion, int mockIndex,
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string dataPortion, int numPartTot,
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vector<VOID> voids,
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bool isObservation, double *boxLen, bool doTrim,
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bool doCentralDenCut) {
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@ -1034,7 +1024,7 @@ void outputVoids(string outputDir, string sampleName, string prefix,
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openFiles(outputDir, sampleName, prefix, dataPortion,
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mockIndex, voids.size(),
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numPartTot, voids.size(),
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&fpZobov, &fpCenters, &fpBarycenter,
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&fpShapes, &fpExtra, &fpSkyPositions);
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