renamed void_pipeline to vide_pipeline

CMakeLists.txt

@@ -81,7 +81,7 @@ ELSE()
 ENDIF()
 
 SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
-configure_exec(${CMAKE_SOURCE_DIR}/python_src/pipeline_source/prepareInputs.in.py
+configure_exec(${CMAKE_SOURCE_DIR}/python_source/pipeline_source/prepareInputs.in.py
 ${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
 #configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
 #${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)
@@ -106,4 +106,4 @@ message(STATUS "Vide binary directory: ${VIDE_BIN}")
 #)
 
 
-subdirs(c_src)
+subdirs(c_source)

README.md

@@ -79,11 +79,11 @@ After installing the package with
 To test that the package is indeed installed you can execute
 
 ```
-python3 -m void_pipeline
+python3 -m vide_pipeline
 ```
 which will state
 ```
-Usage: ./generateCatalog.py parameter_file.py
+Usage: python3 -m vide_pipeline parameter_file.py
 ```
 
 The VIDE tools are all packaged in the `vide` package. 
@@ -98,17 +98,17 @@ The script generates mock catalog and a default pipeline to handle simulations.
 An example of the complete procedure is given here-below:
 ```
 mkdir $HOME/my_vide_test
-cp python_tools/void_pipeline/datasets/example_simulation.py $HOME/my_vide_test
+cp python_tools/vide_pipeline/datasets/example_simulation.py $HOME/my_vide_test
 mkdir $HOME/my_vide_test/examples
 cp examples/example_simulation_z0.0.dat $HOME/my_vide_test/examples
 cd $HOME/my_vide_test
 vide_prepare_simulation   --all --parm example_simulation.py
-python3 -m void_pipeline example_simulation/sim_ss1.0.py
+python3 -m vide_pipeline example_simulation/sim_ss1.0.py
 ```
 
 The example copies the required data in a separate directory. Then, we execute
 the `vide_prepare_simulation` script to generate the auxiliary pipeline.  The
-`void_pipeline` is finally executed on this generated script.
+`vide_pipeline` is finally executed on this generated script.
 
 Notes for CONDA
 ---------------

python_source/vide_pipeline/__main__.py

@@ -32,7 +32,7 @@ import pickle
 # ------------------------------------------------------------------------------
 
 if (len(sys.argv) == 1):
-  print("Usage: python3 -m void_pipeline parameter_file.py")
+  print("Usage: python3 -m vide_pipeline parameter_file.py")
   exit(-1)
 
 if (len(sys.argv) > 1):

setup.py

@@ -207,9 +207,9 @@ class VideScripts(build_scripts):
 vide_extension = CMakeExtension(name="vide")
 
 setup(name='vide',
-      version='2.0',
-      packages=find_packages('python_src'),
-      package_dir={'': 'python_src'},
+      version='3.0',
+      packages=find_packages('python_source'),
+      package_dir={'': 'python_source'},
       setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'],
       install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'],
       ext_modules=[vide_extension],