guilhem_lavaux/vide_public
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renamed void_pipeline to vide_pipeline

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Paul M. Sutter 2024-05-22 18:51:20 -04:00
parent 4d9c5ab2c1
commit d7c0fbc720
5 changed files with 11 additions and 11 deletions
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4
CMakeLists.txt
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@ -81,7 +81,7 @@ ELSE()
ENDIF() ENDIF()
SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE}) SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
configure_exec(${CMAKE_SOURCE_DIR}/python_src/pipeline_source/prepareInputs.in.py configure_exec(${CMAKE_SOURCE_DIR}/python_source/pipeline_source/prepareInputs.in.py
${CMAKE_BINARY_DIR}/pipeline prepareInputs.py) ${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py #configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
#${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py) #${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)
@ -106,4 +106,4 @@ message(STATUS "Vide binary directory: ${VIDE_BIN}")
#) #)
subdirs(c_src) subdirs(c_source)

10
README.md
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@ -79,11 +79,11 @@ After installing the package with
To test that the package is indeed installed you can execute To test that the package is indeed installed you can execute
``` ```
python3 -m void_pipeline python3 -m vide_pipeline
``` ```
which will state which will state
``` ```
Usage: ./generateCatalog.py parameter_file.py Usage: python3 -m vide_pipeline parameter_file.py
``` ```
The VIDE tools are all packaged in the `vide` package. The VIDE tools are all packaged in the `vide` package.
@ -98,17 +98,17 @@ The script generates mock catalog and a default pipeline to handle simulations.
An example of the complete procedure is given here-below: An example of the complete procedure is given here-below:
``` ```
mkdir $HOME/my_vide_test mkdir $HOME/my_vide_test
cp python_tools/void_pipeline/datasets/example_simulation.py $HOME/my_vide_test cp python_tools/vide_pipeline/datasets/example_simulation.py $HOME/my_vide_test
mkdir $HOME/my_vide_test/examples mkdir $HOME/my_vide_test/examples
cp examples/example_simulation_z0.0.dat $HOME/my_vide_test/examples cp examples/example_simulation_z0.0.dat $HOME/my_vide_test/examples
cd $HOME/my_vide_test cd $HOME/my_vide_test
vide_prepare_simulation --all --parm example_simulation.py vide_prepare_simulation --all --parm example_simulation.py
python3 -m void_pipeline example_simulation/sim_ss1.0.py python3 -m vide_pipeline example_simulation/sim_ss1.0.py
``` ```
The example copies the required data in a separate directory. Then, we execute The example copies the required data in a separate directory. Then, we execute
the `vide_prepare_simulation` script to generate the auxiliary pipeline. The the `vide_prepare_simulation` script to generate the auxiliary pipeline. The
`void_pipeline` is finally executed on this generated script. `vide_pipeline` is finally executed on this generated script.
Notes for CONDA Notes for CONDA
--------------- ---------------

0
python_source/void_pipeline/__init__.py → python_source/vide_pipeline/__init__.py
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2
python_source/void_pipeline/__main__.py → python_source/vide_pipeline/__main__.py
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@ -32,7 +32,7 @@ import pickle
# ------------------------------------------------------------------------------ # ------------------------------------------------------------------------------
if (len(sys.argv) == 1): if (len(sys.argv) == 1):
print("Usage: python3 -m void_pipeline parameter_file.py") print("Usage: python3 -m vide_pipeline parameter_file.py")
exit(-1) exit(-1)
if (len(sys.argv) > 1): if (len(sys.argv) > 1):

6
setup.py
View file

@ -207,9 +207,9 @@ class VideScripts(build_scripts):
vide_extension = CMakeExtension(name="vide") vide_extension = CMakeExtension(name="vide")
setup(name='vide', setup(name='vide',
version='2.0', version='3.0',
packages=find_packages('python_src'), packages=find_packages('python_source'),
package_dir={'': 'python_src'}, package_dir={'': 'python_source'},
setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'], setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'],
install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'], install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'],
ext_modules=[vide_extension], ext_modules=[vide_extension],