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Continuing development. Boundary handling seems to be stable and working. Now testing void finding.

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This commit is contained in:
Paul M. Sutter 2025-01-08 15:13:29 +08:00
parent 3dce2593d9
commit cf97cfba5d
6 changed files with 92 additions and 41 deletions
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49
python_source/backend/launchers.py
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@ -76,24 +76,6 @@ def launchPrep(sample, binPath, workDir=None, inputDataDir=None,
sample.maskFile = outputDir + "/constructed_mask.fits"
figureOutMask(datafile, sample.nsideForContour, sample.maskFile)
# compute mean particle separation
(boxVol, nbar) = getSurveyProps(sample.maskFile, sample.zRange[0],
sample.zRange[1], sample.zRange[0], sample.zRange[1], "all",
sample.omegaM, useComoving=useComoving)
numTracers = int(open(outputDir+"/mask_index.txt", "r").read())
sample.meanPartSep = (1.*numTracers/boxVol/nbar)**(-1/3.)
# flag edge galaxies
galFile = outputDir + "galaxies.txt"
edgeGalFile = outputDir + "/galaxy_edge_flags.txt"
#edgeMaskFile = outputDir + "/mask_edge_map.fits"
contourFile = outputDir + "/contour_map.fits"
findEdgeGalaxies(galFile, sample.maskFile, edgeGalFile, contourFile,
sample.zBoundary[0], sample.zBoundary[1], sample.omegaM,
useComoving, sample.boundaryWidth, sample.meanPartSep)
if useComoving:
useComovingFlag = "useComoving"
else:
@ -111,12 +93,11 @@ def launchPrep(sample, binPath, workDir=None, inputDataDir=None,
%s
omegaM %g
nsideForContour %g
meanPartSep %g
""" % (datafile, sample.maskFile, outputFile,
outputDir+"/zobov_slice_"+sampleName+".par",
sample.zBoundary[0], sample.zBoundary[1], sample.fakeDensity,
useComovingFlag, inputParameterFlag, sample.omegaM,
sample.nsideForContour, sample.meanPartSep)
sample.nsideForContour)
parmFile = os.getcwd()+"/prep_"+sample.fullName+".par"
@ -126,6 +107,24 @@ def launchPrep(sample, binPath, workDir=None, inputDataDir=None,
arg1 = "--configFile=%s" % parmFile
with open(logFile, 'wt') as log:
subprocess.call([binPath, arg1], stdout=log, stderr=log)
# compute mean particle separation
(boxVol, nbar) = getSurveyProps(sample.maskFile, sample.zRange[0],
sample.zRange[1], sample.zRange[0], sample.zRange[1], "all",
sample.omegaM, useComoving=useComoving)
numTracers = int(open(outputDir+"/mask_index.txt", "r").read())
sample.meanPartSep = (1.*numTracers/boxVol/nbar)**(-1/3.)
# flag edge galaxies with python routine for now
galFile = outputDir+"/zobov_slice_"+sampleName
#galFile = outputDir + "galaxies.txt"
edgeGalFile = outputDir + "/galaxy_edge_flags.txt"
contourFile = outputDir + "/contour_map.fits"
findEdgeGalaxies(galFile, sample.maskFile, edgeGalFile, contourFile,
sample.zBoundary[0], sample.zBoundary[1], sample.omegaM,
useComoving, sample.boundaryWidth, sample.meanPartSep, outputDir)
if jobSuccessful(logFile, "Done!\n"):
endTime = time.time()
walltime = endTime - startTime
@ -137,6 +136,16 @@ def launchPrep(sample, binPath, workDir=None, inputDataDir=None,
else:
print("already done!")
# compute mean particle separation
# TODO - clean up this duplicate to cover all continueRun options
(boxVol, nbar) = getSurveyProps(sample.maskFile, sample.zRange[0],
sample.zRange[1], sample.zRange[0], sample.zRange[1], "all",
sample.omegaM, useComoving=useComoving)
numTracers = int(open(outputDir+"/mask_index.txt", "r").read())
sample.meanPartSep = (1.*numTracers/boxVol/nbar)**(-1/3.)
if os.access(parmFile, os.F_OK): os.unlink(parmFile)
if os.access("contour_map.fits", os.F_OK):