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Merged in python3 (pull request #5)

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Port to python3, large code cleanup

* Fixed command line for cosmotool

* Fix path

* Dump command line is log file

* Fix important typo

* Modify paths for example

* Fix path again

* Use an explicit constructor

* Change file to open (python 2->3)

* python3 fix for xrange in periodic_kdtree.py

* Fixed index for Np, numPart, numZones, numZonesTot, partID, zoneID in catalogUtil.py
This commit is contained in:
Guilhem Lavaux 2020-12-29 08:56:33 +00:00
parent 8249256508
commit affb56ff48
392 changed files with 4092 additions and 260938 deletions
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83
python_tools/void_python_tools/voidUtil/matchUtil.py
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@ -1,83 +0,0 @@
#!/usr/bin/env python
#+
# VIDE -- Void IDentification and Examination -- ./crossCompare/analysis/mergerTree.py
# Copyright (C) 2010-2013 Guilhem Lavaux
# Copyright (C) 2011-2013 P. M. Sutter
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; version 2 of the License.
#
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#+
__all__=['compareCatalogs',]
from void_python_tools.backend import *
import imp
import pickle
import os
import matplotlib.pyplot as plt
import numpy as np
import argparse
def compareCatalogs(baseCatalogDir, compareCatalogDir,
outputDir="./", logDir="./",
matchMethod="useID", dataPortion="central",
strictMatch=True,
overlapFrac=0.25,
pathToCTools="../../../c_tools"):
# reports the overlap between two void catalogs
# baseCatalogDir: directory of catalog 1
# compareCatagDir: directory of catalog 2
# outputDir: directory to place outputs
# logDir: directory to place log files
# matchMethod: "useID" to use unique IDs, "prox" to use overlap of Voronoi cells
# dataPortion: "central" or "all"
# strictMatch: if True, only attempt to match to trimmed catalog
# overlapFrac: threshold fraction of Voronoi radius to count as matched
# pathToCTools: path to location of VIDE c_tools directory
if not os.access(outputDir, os.F_OK):
os.makedirs(outputDir)
if not os.access(logDir, os.F_OK):
os.makedirs(logDir)
outFileName = outputDir + "/" + "voidOverlap" #+ ".dat"
with open(baseCatalogDir+"/sample_info.dat", 'rb') as input:
baseSample = pickle.load(input)
with open(compareCatalogDir+"/sample_info.dat", 'rb') as input:
sample = pickle.load(input)
print " Comparing", baseSample.fullName, "to", sample.fullName, "...",
sys.stdout.flush()
sampleName = sample.fullName
binPath = pathToCTools+"/analysis/voidOverlap"
logFile = logDir+"/compare_"+baseSample.fullName+"_"+sampleName+".out"
stepOutputFileName = outFileName + "_" + baseSample.fullName + "_" + \
sampleName + "_"
launchVoidOverlap(baseSample, sample, baseCatalogDir,
compareCatalogDir, binPath,
thisDataPortion=dataPortion, logFile=logFile,
continueRun=False,
outputFile=stepOutputFileName,
matchMethod=matchMethod,
overlapFrac=overlapFrac,
strictMatch=strictMatch)
print " Done!"
return