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preparing public version
This commit is contained in:
P.M. Sutter
parent
c57359197c
commit
ad3e5d1577
25 changed files with 934 additions and 1500 deletions
86
external/cosmotool/CMakeLists.txt
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86
external/cosmotool/CMakeLists.txt
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@ -0,0 +1,86 @@
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cmake_minimum_required(VERSION 2.6)
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list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}")
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project(CosmoToolbox)
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include(GetGitRevisionDescription)
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include(ExternalProject)
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include(FindOpenMP)
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get_git_head_revision(HEAD GIT_VER)
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option(BUILD_SHARED_LIBS "Build shared libraries." OFF)
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option(BUILD_STATIC_LIBS "Build static libraries." ON)
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option(ENABLE_OPENMP "Enable OpenMP support." OFF)
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option(ENABLE_SHARP "Enable SPHT support." ON)
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find_path(NETCDF_INCLUDE_PATH NAMES netcdf.h)
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find_path(NETCDFCPP_INCLUDE_PATH NAMES netcdfcpp.h netcdf)
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find_path(GSL_INCLUDE_PATH NAMES gsl/gsl_blas.h)
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IF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
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SET(FOUND_NETCDF4 1)
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#define NETCDFCPP4 1")
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ELSE(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
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SET(FOUND_NETCDF3 1)
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#undef NETCDFCPP4")
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ENDIF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
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find_library(NETCDF_LIBRARY netcdf)
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find_library(NETCDFCPP_LIBRARY NAMES netcdf_c++ netcdf_c++4)
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find_library(GSL_LIBRARY gsl)
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find_library(GSLCBLAS_LIBRARY gslcblas)
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if (ENABLE_SHARP)
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SET(SHARP_SOURCE ${CMAKE_SOURCE_DIR}/external/sharp)
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SET(DEP_BUILD ${CMAKE_SOURCE_DIR}/external/sharp/auto)
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ExternalProject_Add(sharp
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SOURCE_DIR ${SHARP_SOURCE}
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BUILD_IN_SOURCE 1
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CONFIGURE_COMMAND ${SHARP_SOURCE}/configure --prefix=${DEP_BUILD}
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BUILD_COMMAND ${CMAKE_MAKE_PROGRAM}
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INSTALL_COMMAND echo "No install"
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)
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SET(SHARP_LIBRARY ${DEP_BUILD}/lib/libsharp.a)
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SET(SHARP_LIBRARIES ${SHARP_LIBRARY})
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SET(SHARP_INCLUDE_PATH ${DEP_BUILD}/include)
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endif (ENABLE_SHARP)
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set(HDF5_FIND_COMPONENTS HL CXX)
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if(HDF5_ROOTDIR)
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SET(ENV{HDF5_ROOT} ${HDF5_ROOTDIR})
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endif(HDF5_ROOTDIR)
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include(FindHDF5)
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include(FindPkgConfig)
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pkg_check_modules(FFTW3 fftw3>=3.3)
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pkg_check_modules(FFTW3F fftw3f>=3.3)
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pkg_check_modules(EIGEN3 eigen3)
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include(FindPackageHandleStandardArgs)
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set(NETCDF_FIND_REQUIRED TRUE)
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set(GSL_FIND_REQUIRED TRUE)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(NetCDF DEFAULT_MSG NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(GSL DEFAULT_MSG GSL_LIBRARY GSLCBLAS_LIBRARY GSL_INCLUDE_PATH)
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set(GSL_LIBRARIES ${GSL_LIBRARY} ${GSLCBLAS_LIBRARY})
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# CPACK Configuration
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SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A toolbox for impatient cosmologists")
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SET(CPACK_PACKAGE_VENDOR "Guilhem Lavaux")
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SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENCE_CeCILL_V2")
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SET(CPACK_PACKAGE_VERSION_MAJOR "1")
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SET(CPACK_PACKAGE_VERSION_MINOR "0")
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SET(CPACK_PACKAGE_VERSION_PATCH "0-${GIT_VER}")
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SET(CPACK_PACKAGE_INSTALL_DIRECTORY "CosmoToolbox-${GalaxExplorer_VERSION_MAJOR}.${GalaxExplorer_VERSION_MINOR}")
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SET(CPACK_STRIP_FILES "lib/libCosmoTool.so")
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SET(CPACK_SOURCE_IGNORE_FILES
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"/CVS/;/\\\\.git/;/\\\\.svn/;\\\\.swp$;\\\\.#;/#;.*~;cscope.*;/CMakeFiles/;.*\\\\.cmake;Makefile")
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add_subdirectory(src)
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add_subdirectory(sample)
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include(CPack)
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65
external/cosmotool/sample/CMakeLists.txt
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65
external/cosmotool/sample/CMakeLists.txt
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SET(tolink ${GSL_LIBRARIES} CosmoTool ${CosmoTool_LIBS})
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include_directories(${CMAKE_SOURCE_DIR}/src ${FFTW3_INCLUDE_DIRS} ${EIGEN3_INCLUDE_DIRS} ${NETCDF_INCLUDE_PATH} ${GSL_INCLUDE_PATH})
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IF(SHARP_INCLUDE_PATH)
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include_directories(BEFORE ${SHARP_INCLUDE_PATH})
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ENDIF(SHARP_INCLUDE_PATH)
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add_executable(testBQueue testBQueue.cpp)
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target_link_libraries(testBQueue ${tolink})
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add_executable(testInterpolate testInterpolate.cpp)
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target_link_libraries(testInterpolate ${tolink})
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add_executable(testSmooth testSmooth.cpp)
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target_link_libraries(testSmooth ${tolink})
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add_executable(testkd testkd.cpp)
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target_link_libraries(testkd ${tolink})
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add_executable(testkd2 testkd2.cpp)
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target_link_libraries(testkd2 ${tolink})
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add_executable(testkd3 testkd3.cpp)
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target_link_libraries(testkd3 ${tolink})
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add_executable(testDelaunay testDelaunay.cpp)
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target_link_libraries(testDelaunay ${tolink})
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add_executable(testNewton testNewton.cpp)
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target_link_libraries(testNewton ${tolink})
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add_executable(testPool testPool.cpp)
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target_link_libraries(testPool ${tolink})
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if (HDF5_FOUND)
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add_executable(testReadFlash testReadFlash.cpp)
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target_link_libraries(testReadFlash ${tolink})
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endif (HDF5_FOUND)
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add_executable(testEskow testEskow.cpp)
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target_link_libraries(testEskow ${tolink})
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add_executable(testAlgo testAlgo.cpp)
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target_link_libraries(testAlgo ${tolink})
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add_executable(testBSP testBSP.cpp)
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target_link_libraries(testBSP ${tolink})
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if (FFTW3_FOUND AND FFTW3F_FOUND AND EIGEN3_FOUND)
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add_executable(test_fft_calls test_fft_calls.cpp)
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target_link_libraries(test_fft_calls ${tolink} ${FFTW3_LIBRARIES} ${FFTW3F_LIBRARIES})
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endif (FFTW3_FOUND AND FFTW3F_FOUND AND EIGEN3_FOUND)
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if (ENABLE_SHARP AND SHARP_LIBRARY AND SHARP_INCLUDE_PATH AND EIGEN3_FOUND)
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include_directories(${SHARP_INCLUDE_PATH})
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add_executable(test_healpix_calls test_healpix_calls.cpp)
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target_link_libraries(test_healpix_calls ${tolink} ${SHARP_LIBRARIES})
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set_target_properties(test_healpix_calls PROPERTIES COMPILE_FLAGS ${OpenMP_CXX_FLAGS} LINK_FLAGS ${OpenMP_CXX_FLAGS})
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add_dependencies(test_healpix_calls sharp)
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endif (ENABLE_SHARP AND SHARP_LIBRARY AND SHARP_INCLUDE_PATH AND EIGEN3_FOUND)
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add_executable(test_cosmopower test_cosmopower.cpp)
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target_link_libraries(test_cosmopower ${tolink})
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92
external/cosmotool/src/CMakeLists.txt
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92
external/cosmotool/src/CMakeLists.txt
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@ -0,0 +1,92 @@
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SET(CosmoTool_SRCS
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fortran.cpp
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interpolate.cpp
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load_data.cpp
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loadGadget.cpp
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loadRamses.cpp
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octTree.cpp
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powerSpectrum.cpp
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miniargs.cpp
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growthFactor.cpp
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cosmopower.cpp
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)
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IF(FOUND_NETCDF3)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc3.cpp)
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ELSE(FOUND_NETCDF3)
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IF(FOUND_NETCDF4)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc4.cpp)
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ENDIF(FOUND_NETCDF4)
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ENDIF(FOUND_NETCDF3)
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if (HDF5_FOUND)
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set(CosmoTool_SRCS ${CosmoTool_SRCS}
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h5_readFlash.cpp
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loadFlash.cpp
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)
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else(HDF5_FOUND)
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set(CosmoTool_SRCS ${CosmoTool_SRCS}
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loadFlash_dummy.cpp
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)
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endif (HDF5_FOUND)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS}
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bqueue.hpp
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config.hpp
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dinterpolate.hpp
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field.hpp
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fixArray.hpp
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fortran.hpp
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interpolate3d.hpp
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interpolate.hpp
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kdtree_leaf.hpp
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load_data.hpp
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loadGadget.hpp
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loadRamses.hpp
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loadSimu.hpp
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miniargs.hpp
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mykdtree.hpp
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octTree.hpp
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powerSpectrum.hpp
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sparseGrid.hpp
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sphSmooth.hpp
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yorick.hpp
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growthFactor.hpp
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)
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include_directories(${GSL_INCLUDE_PATH} ${NETCDF_INCLUDE_PATH} ${NETCDFCPP_INCLUDE_PATH} ${CMAKE_BINARY_DIR}/src)
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set(CosmoTool_LIBS ${NETCDFCPP_LIBRARY} ${NETCDF_LIBRARY} ${GSL_LIBRARIES})
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if (HDF5_FOUND)
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set(CosmoTool_LIBS ${CosmoTool_LIBS} ${HDF5_CXX_LIBRARIES} ${HDF5_LIBRARIES})
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include_directories(${HDF5_INCLUDE_DIRS})
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endif (HDF5_FOUND)
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set(CosmoTool_LIBS ${CosmoTool_LIBS} PARENT_SCOPE)
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if (BUILD_SHARED_LIBS)
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add_library(CosmoTool SHARED ${CosmoTool_SRCS})
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target_link_libraries(CosmoTool ${CosmoTool_LIBS})
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if (BUILD_STATIC_LIBS)
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add_library(CosmoTool_static STATIC ${CosmoTool_SRCS})
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endif(BUILD_STATIC_LIBS)
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else (BUILD_SHARED_LIBS)
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add_library(CosmoTool STATIC ${CosmoTool_SRCS})
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endif (BUILD_SHARED_LIBS)
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install(TARGETS CosmoTool
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LIBRARY DESTINATION lib
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ARCHIVE DESTINATION lib)
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if (BUILD_SHARED_LIBS)
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install(TARGETS CosmoTool_static
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LIBRARY DESTINATION lib
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ARCHIVE DESTINATION lib)
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endif (BUILD_SHARED_LIBS)
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install(DIRECTORY . DESTINATION include/CosmoTool
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FILES_MATCHING PATTERN "*.hpp")
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install(DIRECTORY . DESTINATION include/CosmoTool
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FILES_MATCHING PATTERN "*.tcc")
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