guilhem_lavaux/vide_public
0
0
Fork 0
mirror of https://bitbucket.org/cosmicvoids/vide_public.git synced 2025-07-04 23:31:12 +00:00
Code Issues Projects Releases Packages Wiki Activity Actions

fixed bug in handling subhalos

Browse source
This commit is contained in:
P.M. Sutter 2014-02-09 06:11:06 -06:00
parent 5aba171bed
commit a9e040540b
2 changed files with 40 additions and 18 deletions
Download patch file Download diff file Expand all files Collapse all files

38
python_tools/pipeline_source/prepareCatalogs.in.py
View file

@ -264,6 +264,19 @@ newSample.addStack(0.0, 5.0, 85, 90, False, False, rescaleMode="rv")
newSample.addStack(0.0, 5.0, 90, 95, False, False, rescaleMode="rv") newSample.addStack(0.0, 5.0, 90, 95, False, False, rescaleMode="rv")
newSample.addStack(0.0, 5.0, 95, 100, False, False, rescaleMode="rv") newSample.addStack(0.0, 5.0, 95, 100, False, False, rescaleMode="rv")
""" """
elif stackMode == "sample_thick":
stackInfo = """
# {zMin}, {zMax}, {minRadius}
newSample.addStack({zMin}, {zMax}, 10, 20, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 20, 30, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 30, 40, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 40, 50, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 50, 60, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 60, 70, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 70, 80, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 80, 90, True, False, rescaleMode="rmax")
newSample.addStack({zMin}, {zMax}, 90, 100, True, False, rescaleMode="rmax")
"""
elif stackMode == "log": elif stackMode == "log":
stackInfo = "" stackInfo = ""
@ -279,15 +292,15 @@ newSample.addStack(0.0, 5.0, 95, 100, False, False, rescaleMode="rv")
rStart = rEnd rStart = rEnd
# elif stackMode == "auto": elif stackMode == "auto":
# stackInfo = """ stackInfo = """
#newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+2, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+2, True, False, rescaleMode="rv")
#newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+4, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+4, True, False, rescaleMode="rv")
#newSample.addStack({zMin}, {zMax}, 2*{minRadius}+2, 2*{minRadius}+6, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius}+2, 2*{minRadius}+6, True, False, rescaleMode="rv")
#newSample.addStack({zMin}, {zMax}, 2*{minRadius}+6, 2*{minRadius}+10, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius}+6, 2*{minRadius}+10, True, False, rescaleMode="rv")
#newSample.addStack({zMin}, {zMax}, 2*{minRadius}+10, 2*{minRadius}+18, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius}+10, 2*{minRadius}+18, True, False, rescaleMode="rv")
#newSample.addStack({zMin}, {zMax}, 2*{minRadius}+18, 2*{minRadius}+24, True, False, rescaleMode="rv") newSample.addStack({zMin}, {zMax}, 2*{minRadius}+18, 2*{minRadius}+24, True, False, rescaleMode="rv")
# """ """
else: else:
stackInfo = """ stackInfo = """
# {zMin}, {zMax}, {minRadius} # {zMin}, {zMax}, {minRadius}
@ -840,8 +853,10 @@ if (args.halos or args.all) and haloFileBase != "":
# do the check again since now we've filtered out subhalos # do the check again since now we've filtered out subhalos
numPart = 0 numPart = 0
for line in enumerate(tempFile): fileTemp = open(tempFile, 'r')
for line in fileTemp:
numPart += 1 numPart += 1
fileTemp.close()
actualDen = 1.*numPart / lbox**3 actualDen = 1.*numPart / lbox**3
keepFraction = haloDen / actualDen keepFraction = haloDen / actualDen
@ -850,10 +865,13 @@ if (args.halos or args.all) and haloFileBase != "":
exit(-1) exit(-1)
numKept = 0 numKept = 0
inFile = open(dataFile, 'r')
outFile = open(outFileName, 'a')
for (iLine,line) in enumerate(inFile): for (iLine,line) in enumerate(inFile):
if np.random.uniform() > keepFraction: continue if np.random.uniform() > keepFraction: continue
outFile.write(line) outFile.write(line)
numKept += 1 numKept += 1
inFile.close()
outFile.write("-99 -99 -99 -99 -99 -99 -99 -99\n") outFile.write("-99 -99 -99 -99 -99 -99 -99 -99\n")
outFile.close() outFile.close()

14
python_tools/void_python_tools/backend/launchers.py
View file

@ -43,6 +43,8 @@ import void_python_tools.apTools as vp
NetCDFFile = Dataset NetCDFFile = Dataset
ncFloat = 'f8' # Double precision ncFloat = 'f8' # Double precision
LIGHT_SPEED = 299792.458
# ----------------------------------------------------------------------------- # -----------------------------------------------------------------------------
def launchGenerate(sample, binPath, workDir=None, inputDataDir=None, def launchGenerate(sample, binPath, workDir=None, inputDataDir=None,
zobovDir=None, figDir=None, logFile=None, useComoving=False, zobovDir=None, figDir=None, logFile=None, useComoving=False,
@ -561,6 +563,7 @@ def launchVoidOverlap(sample1, sample2, sample1Dir, sample2Dir,
def launchStack(sample, stack, binPath, thisDataPortion=None, logDir=None, def launchStack(sample, stack, binPath, thisDataPortion=None, logDir=None,
voidDir=None, freshStack=True, runSuffix=None, voidDir=None, freshStack=True, runSuffix=None,
zobovDir=None, useLightCone=None, useComoving=None, zobovDir=None, useLightCone=None, useComoving=None,
omegaM=None,
INCOHERENT=False, ranSeed=None, summaryFile=None, INCOHERENT=False, ranSeed=None, summaryFile=None,
continueRun=None, dataType=None, prefixRun="", continueRun=None, dataType=None, prefixRun="",
idList=None, rescaleOverride=None): idList=None, rescaleOverride=None):
@ -589,12 +592,13 @@ def launchStack(sample, stack, binPath, thisDataPortion=None, logDir=None,
zMin = max(sample.zRange[0], stack.zMin) zMin = max(sample.zRange[0], stack.zMin)
zMax = min(sample.zRange[1], stack.zMax) zMax = min(sample.zRange[1], stack.zMax)
if useComoving or not useLightCone: if useComoving or not useLightCone:
zMin = 3000.*vp.angularDiameter(zMin, Om=0.27) zMin = LIGHT_SPEED/100.*vp.angularDiameter(zMin, Om=omegaM)
zMax = 3000.*vp.angularDiameter(zMax, Om=0.27) zMax = LIGHT_SPEED/100.*vp.angularDiameter(zMax, Om=omegaM)
print min(sample.zRange[1],stack.zMax)*3000, zMax print min(sample.zRange[1],stack.zMax)*LIGHT_SPEED/100., zMax
print max(sample.zRange[0],stack.zMin)*LIGHT_SPEED/100., zMin
else: else:
zMin *= 3000 zMin *= LIGHT_SPEED/100.
zMax *= 3000 zMax *= LIGHT_SPEED/100.
if dataType == "observation": if dataType == "observation":
obsFlag = "observation" obsFlag = "observation"