mirror of
https://bitbucket.org/cosmicvoids/vide_public.git
synced 2025-07-13 19:43:04 +00:00
Merged in guilhem/update_dependencies (pull request #11)
Update dependencies in 1.0 and compile errors on modern compiler
This commit is contained in:
commit
8329b2c9ed
7 changed files with 193 additions and 154 deletions
220
CMakeLists.txt
220
CMakeLists.txt
|
|
@ -1,109 +1,111 @@
|
|||
cmake_minimum_required(VERSION 3.2)
|
||||
set(CMAKE_CXX_STANDARD 11)
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||||
|
||||
project(zobovPerso)
|
||||
|
||||
include(CheckCCompilerFlag)
|
||||
include(ExternalProject)
|
||||
|
||||
check_c_compiler_flag(-march=native SUPPORT_ARCH_NATIVE )
|
||||
|
||||
|
||||
|
||||
find_library(MATH_LIB m)
|
||||
find_library(DL_LIB dl)
|
||||
|
||||
macro(add_genopt _sourcelist _ggofile _basefile)
|
||||
|
||||
unset(_structname)
|
||||
unset(_funcname)
|
||||
|
||||
if(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
set(_ggofile2 ${CMAKE_CURRENT_SOURCE_DIR}/${_ggofile})
|
||||
else(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
set(_ggofile2 ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
endif(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
|
||||
foreach(arg ${ARGN})
|
||||
if ("x${arg}" MATCHES "^x(STRUCTNAME|FUNCNAME)$")
|
||||
SET(doing "${arg}")
|
||||
elseif(doing STREQUAL "STRUCTNAME")
|
||||
SET(_structname ${arg})
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||||
elseif(doing STREQUAL "FUNCNAME")
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||||
SET(_funcname ${arg})
|
||||
endif()
|
||||
endforeach(arg ${ARGN})
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||||
|
||||
if(NOT DEFINED _structname)
|
||||
set(_structname ${_basefile})
|
||||
endif(NOT DEFINED _structname)
|
||||
|
||||
if(NOT DEFINED _funcname)
|
||||
set(_funcname ${_basefile})
|
||||
endif(NOT DEFINED _funcname)
|
||||
|
||||
set(_cfile ${CMAKE_CURRENT_BINARY_DIR}/${_basefile}.c)
|
||||
set(_hfile ${CMAKE_CURRENT_BINARY_DIR}/${_basefile}.h)
|
||||
|
||||
add_custom_command(
|
||||
OUTPUT ${_cfile} ${_hfile}
|
||||
COMMAND ${GENGETOPT} -i ${_ggofile2} -f ${_funcname} -a ${_structname} zobovConf_info -F ${_basefile} -C
|
||||
DEPENDS ${_ggofile2}
|
||||
)
|
||||
|
||||
set(${_sourcelist} ${_cfile} ${${_sourcelist}})
|
||||
|
||||
endmacro(add_genopt)
|
||||
|
||||
macro(configure_exec _source _destdir _destfile)
|
||||
|
||||
SET(TMP_CONFIGURE_DIR ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY})
|
||||
configure_file(${_source} ${TMP_CONFIGURE_DIR}/${_destfile} @ONLY)
|
||||
file(COPY ${TMP_CONFIGURE_DIR}/${_destfile} DESTINATION ${_destdir}
|
||||
FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
|
||||
|
||||
endmacro(configure_exec)
|
||||
|
||||
include(${CMAKE_SOURCE_DIR}/external/external_build.cmake)
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||||
include(${CMAKE_SOURCE_DIR}/external/external_cosmotool.cmake)
|
||||
include(${CMAKE_SOURCE_DIR}/external/external_python_build.cmake)
|
||||
|
||||
option(INSTALL_PYTHON_LOCAL OFF)
|
||||
option(INSTALL_CTOOLS_IN_PYTHON OFF)
|
||||
IF(PYTHON_SITE_PACKAGES)
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${PYTHON_SITE_PACKAGES})
|
||||
ELSE()
|
||||
IF (INSTALL_PYTHON_LOCAL)
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${USER_PYTHON_SITE_PACKAGES})
|
||||
ELSE()
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${SYSTEM_PYTHON_SITE_PACKAGES})
|
||||
ENDIF()
|
||||
ENDIF()
|
||||
|
||||
SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
|
||||
configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/prepareInputs.in.py
|
||||
${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
|
||||
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
|
||||
#${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)
|
||||
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/buildSkyProjections.in.py
|
||||
#${CMAKE_BINARY_DIR}/pipeline/miscTools buildSkyProjections.py)
|
||||
|
||||
SET(python_build_environment
|
||||
${CMAKE_COMMAND} -DPYTHON_LOCAL_SITE_PACKAGE=${PYTHON_LOCAL_SITE_PACKAGE} -DVOID_GSL=${CMAKE_BINARY_DIR}/ext_build/gsl -DPYTHON_EXECUTABLE=${PYTHON_EXECUTABLE} -DTARGET_PATH=${CMAKE_BINARY_DIR}/ext_build/python -P)
|
||||
|
||||
if (INSTALL_CTOOLS_IN_PYTHON)
|
||||
SET(VIDE_BIN ${PYTHON_LOCAL_SITE_PACKAGE}/void_python_tools/bin)
|
||||
else()
|
||||
SET(VIDE_BIN ${CMAKE_INSTALL_PREFIX}/bin)
|
||||
endif()
|
||||
message(STATUS "Vide binary directory: ${VIDE_BIN}")
|
||||
|
||||
#add_custom_target(python_pipeline ALL
|
||||
# COMMAND ${python_build_environment} ${CMAKE_SOURCE_DIR}/external/python_build.cmake
|
||||
# COMMAND ${python_build_environment} ${CMAKE_SOURCE_DIR}/external/python_install.cmake
|
||||
# DEPENDS gsl cython netcdf4-python ${PYTHON_AUXILIARY_DEPEND}
|
||||
# WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/python_tools
|
||||
#)
|
||||
|
||||
|
||||
subdirs(zobov c_tools)
|
||||
cmake_minimum_required(VERSION 3.12..3.31)
|
||||
set(CMAKE_CXX_STANDARD 11)
|
||||
cmake_policy(SET CMP0135 OLD)
|
||||
cmake_policy(SET CMP0148 OLD)
|
||||
|
||||
project(zobovPerso)
|
||||
|
||||
include(CheckCCompilerFlag)
|
||||
include(ExternalProject)
|
||||
|
||||
check_c_compiler_flag(-march=native SUPPORT_ARCH_NATIVE )
|
||||
|
||||
|
||||
|
||||
find_library(MATH_LIB m)
|
||||
find_library(DL_LIB dl)
|
||||
|
||||
macro(add_genopt _sourcelist _ggofile _basefile)
|
||||
|
||||
unset(_structname)
|
||||
unset(_funcname)
|
||||
|
||||
if(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
set(_ggofile2 ${CMAKE_CURRENT_SOURCE_DIR}/${_ggofile})
|
||||
else(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
set(_ggofile2 ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
endif(NOT EXISTS ${CMAKE_CURRENT_BINARY_DIR}/${_ggofile})
|
||||
|
||||
foreach(arg ${ARGN})
|
||||
if ("x${arg}" MATCHES "^x(STRUCTNAME|FUNCNAME)$")
|
||||
SET(doing "${arg}")
|
||||
elseif(doing STREQUAL "STRUCTNAME")
|
||||
SET(_structname ${arg})
|
||||
elseif(doing STREQUAL "FUNCNAME")
|
||||
SET(_funcname ${arg})
|
||||
endif()
|
||||
endforeach(arg ${ARGN})
|
||||
|
||||
if(NOT DEFINED _structname)
|
||||
set(_structname ${_basefile})
|
||||
endif(NOT DEFINED _structname)
|
||||
|
||||
if(NOT DEFINED _funcname)
|
||||
set(_funcname ${_basefile})
|
||||
endif(NOT DEFINED _funcname)
|
||||
|
||||
set(_cfile ${CMAKE_CURRENT_BINARY_DIR}/${_basefile}.c)
|
||||
set(_hfile ${CMAKE_CURRENT_BINARY_DIR}/${_basefile}.h)
|
||||
|
||||
add_custom_command(
|
||||
OUTPUT ${_cfile} ${_hfile}
|
||||
COMMAND ${GENGETOPT} -i ${_ggofile2} -f ${_funcname} -a ${_structname} zobovConf_info -F ${_basefile} -C
|
||||
DEPENDS ${_ggofile2}
|
||||
)
|
||||
|
||||
set(${_sourcelist} ${_cfile} ${${_sourcelist}})
|
||||
|
||||
endmacro(add_genopt)
|
||||
|
||||
macro(configure_exec _source _destdir _destfile)
|
||||
|
||||
SET(TMP_CONFIGURE_DIR ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY})
|
||||
configure_file(${_source} ${TMP_CONFIGURE_DIR}/${_destfile} @ONLY)
|
||||
file(COPY ${TMP_CONFIGURE_DIR}/${_destfile} DESTINATION ${_destdir}
|
||||
FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
|
||||
|
||||
endmacro(configure_exec)
|
||||
|
||||
include(${CMAKE_SOURCE_DIR}/external/external_build.cmake)
|
||||
include(${CMAKE_SOURCE_DIR}/external/external_cosmotool.cmake)
|
||||
include(${CMAKE_SOURCE_DIR}/external/external_python_build.cmake)
|
||||
|
||||
option(INSTALL_PYTHON_LOCAL OFF)
|
||||
option(INSTALL_CTOOLS_IN_PYTHON OFF)
|
||||
IF(PYTHON_SITE_PACKAGES)
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${PYTHON_SITE_PACKAGES})
|
||||
ELSE()
|
||||
IF (INSTALL_PYTHON_LOCAL)
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${USER_PYTHON_SITE_PACKAGES})
|
||||
ELSE()
|
||||
SET(PYTHON_LOCAL_SITE_PACKAGE ${SYSTEM_PYTHON_SITE_PACKAGES})
|
||||
ENDIF()
|
||||
ENDIF()
|
||||
|
||||
SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
|
||||
configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/prepareInputs.in.py
|
||||
${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
|
||||
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
|
||||
#${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)
|
||||
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/buildSkyProjections.in.py
|
||||
#${CMAKE_BINARY_DIR}/pipeline/miscTools buildSkyProjections.py)
|
||||
|
||||
SET(python_build_environment
|
||||
${CMAKE_COMMAND} -DPYTHON_LOCAL_SITE_PACKAGE=${PYTHON_LOCAL_SITE_PACKAGE} -DVOID_GSL=${CMAKE_BINARY_DIR}/ext_build/gsl -DPYTHON_EXECUTABLE=${PYTHON_EXECUTABLE} -DTARGET_PATH=${CMAKE_BINARY_DIR}/ext_build/python -P)
|
||||
|
||||
if (INSTALL_CTOOLS_IN_PYTHON)
|
||||
SET(VIDE_BIN ${PYTHON_LOCAL_SITE_PACKAGE}/void_python_tools/bin)
|
||||
else()
|
||||
SET(VIDE_BIN ${CMAKE_INSTALL_PREFIX}/bin)
|
||||
endif()
|
||||
message(STATUS "Vide binary directory: ${VIDE_BIN}")
|
||||
|
||||
#add_custom_target(python_pipeline ALL
|
||||
# COMMAND ${python_build_environment} ${CMAKE_SOURCE_DIR}/external/python_build.cmake
|
||||
# COMMAND ${python_build_environment} ${CMAKE_SOURCE_DIR}/external/python_install.cmake
|
||||
# DEPENDS gsl cython netcdf4-python ${PYTHON_AUXILIARY_DEPEND}
|
||||
# WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/python_tools
|
||||
#)
|
||||
|
||||
|
||||
subdirs(zobov c_tools)
|
||||
|
|
|
|||
|
|
@ -78,7 +78,7 @@ double halo_concentration(double m)
|
|||
|
||||
double cvir_model(double mass)
|
||||
{
|
||||
double cvir,z_coll,zbrent(),rad;
|
||||
double cvir,z_coll,rad;
|
||||
double k=3.12;
|
||||
double f=0.001;
|
||||
|
||||
|
|
|
|||
|
|
@ -542,7 +542,7 @@ double func_central_density(double m)
|
|||
*/
|
||||
double number_weighted_halo_mass()
|
||||
{
|
||||
double funcxx1();
|
||||
double funcxx1(double);
|
||||
return(qromo(funcxx1,log(HOD.M_low),log(HOD.M_max),midpnt)/GALAXY_DENSITY);
|
||||
}
|
||||
double funcxx1(double m)
|
||||
|
|
@ -556,7 +556,7 @@ double funcxx1(double m)
|
|||
*/
|
||||
double number_weighted_central_mass()
|
||||
{
|
||||
double funcxx2();
|
||||
double funcxx2(double);
|
||||
return(qromo(funcxx2,log(HOD.M_low),log(HOD.M_max),midpnt)/
|
||||
qromo(func_central_density,log(HOD.M_low),log(HOD.M_max),midpnt));
|
||||
}
|
||||
|
|
|
|||
|
|
@ -32,7 +32,7 @@ double xi_interp(double r)
|
|||
static int flag=0,prev_cosmo=0;
|
||||
static double *x,*y,*y2;
|
||||
int n=30,i,j;
|
||||
double a,xi_int(),rhi=95,rlo=0.1,dlogr,klo,s1,s2,tolerance=1.0e-6;
|
||||
double a,rhi=95,rlo=0.1,dlogr,klo,s1,s2,tolerance=1.0e-6;
|
||||
|
||||
if(!flag || RESET_COSMOLOGY!=prev_cosmo)
|
||||
{
|
||||
|
|
@ -99,7 +99,7 @@ double xi_linear_interp(double r)
|
|||
static double *x,*y,*y2;
|
||||
int n=100,i;
|
||||
double a,rlo=0.1,rhi=150,dlogr,klo;
|
||||
double xi_linear_int();
|
||||
double xi_linear_int(double);
|
||||
|
||||
if(!flag || RESET_COSMOLOGY!=prev_cosmo)
|
||||
{
|
||||
|
|
|
|||
|
|
@ -8,7 +8,6 @@ double zbrent(double (*func)(double), double x1,double x2, double tol)
|
|||
int iter;
|
||||
double a=x1,b=x2,c,d,e,min1,min2;
|
||||
double fa=(*func)(a),fb=(*func)(b),fc,p,q,r,s,tol1,xm;
|
||||
void nrerror();
|
||||
|
||||
if (fb*fa > 0.0)
|
||||
{
|
||||
|
|
|
|||
114
external/external_build.cmake
vendored
114
external/external_build.cmake
vendored
|
|
@ -29,13 +29,14 @@ IF(INTERNAL_GENGETOPT)
|
|||
ENDIF(INTERNAL_GENGETOPT)
|
||||
|
||||
IF(INTERNAL_HDF5)
|
||||
SET(HDF5_URL "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz" CACHE STRING "URL to download HDF5 from")
|
||||
SET(HDF5_URL "https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5_1.14.6.tar.gz" CACHE STRING "URL to download HDF5 from")
|
||||
mark_as_advanced(HDF5_URL)
|
||||
ENDIF(INTERNAL_HDF5)
|
||||
|
||||
IF(INTERNAL_NETCDF)
|
||||
SET(NETCDF_URL "https://github.com/Unidata/netcdf-c/archive/v4.7.3.tar.gz" CACHE STRING "URL to download NetCDF from")
|
||||
SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/v4.3.1.tar.gz" CACHE STRING "URL to download NetCDF-CXX from")
|
||||
SET(NETCDF_URL "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.3.tar.gz" CACHE STRING "URL to download NetCDF from")
|
||||
SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/8ba2dd92277dbc1058b3a024933e09a69246b481.tar.gz" CACHE STRING "URL to download NetCDF-CXX from")
|
||||
#SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/v4.3.1.tar.gz" CACHE STRING "URL to download NetCDF-CXX from")
|
||||
mark_as_advanced(NETCDF_URL)
|
||||
ENDIF(INTERNAL_NETCDF)
|
||||
|
||||
|
|
@ -51,7 +52,7 @@ IF(INTERNAL_QHULL)
|
|||
mark_as_advanced(QHULL_URL)
|
||||
ENDIF(INTERNAL_QHULL)
|
||||
|
||||
SET(HEALPIX_URL "https://sourceforge.net/projects/healpix/files/Healpix_3.50/healpix_cxx-3.50.0.tar.gz/download" CACHE STRING "URL for Healpix")
|
||||
SET(HEALPIX_URL "https://sourceforge.net/projects/healpix/files/Healpix_3.83/Healpix_3.83_2024Nov13.tar.gz/download" CACHE STRING "URL for Healpix")
|
||||
mark_as_advanced(HEALPIX_URL)
|
||||
|
||||
|
||||
|
|
@ -102,7 +103,7 @@ if (INTERNAL_HDF5)
|
|||
ExternalProject_Add(hdf5
|
||||
PREFIX ${BUILD_PREFIX}/hdf5-prefix
|
||||
URL ${HDF5_URL}
|
||||
URL_HASH MD5=e115eeb66e944fa7814482415dd21cc4
|
||||
URL_HASH SHA256=09ee1c671a87401a5201c06106650f62badeea5a3b3941e9b1e2e1e08317357f
|
||||
CMAKE_ARGS
|
||||
-DCMAKE_INSTALL_PREFIX=${EXT_INSTALL}
|
||||
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
|
||||
|
|
@ -110,7 +111,9 @@ if (INTERNAL_HDF5)
|
|||
-DHDF5_BUILD_CPP_LIB=ON
|
||||
-DHDF5_BUILD_TOOLS=ON
|
||||
-DHDF5_BUILD_HL_LIB=ON
|
||||
-DDEFAULT_API_VERSION:STRING=v110
|
||||
-DBUILD_SHARED_LIBS=ON
|
||||
-DHDF5_ENABLE_NONSTANDARD_FEATURE_FLOAT16=OFF
|
||||
BUILD_BYPRODUCTS ${EXT_INSTALL}/lib/libhdf5-static.a ${EXT_INSTALL}/lib/libhdf5_cpp.a
|
||||
)
|
||||
SET(hdf5_built hdf5)
|
||||
|
|
@ -151,39 +154,68 @@ if (INTERNAL_NETCDF)
|
|||
DEPENDS ${hdf5_built}
|
||||
PREFIX ${BUILD_PREFIX}/netcdf-prefix
|
||||
URL ${NETCDF_URL}
|
||||
PATCH_COMMAND ${CMAKE_COMMAND}
|
||||
-DBUILD_PREFIX=${BUILD_PREFIX}/netcdf-prefix
|
||||
-DPATCH_FILE=${CMAKE_SOURCE_DIR}/external/patch_netcdf
|
||||
-DSOURCE_PREFIX=${BUILD_PREFIX}/netcdf-prefix/src/netcdf/ncgen3
|
||||
-P ${CMAKE_SOURCE_DIR}/external/check_and_apply_patch.cmake
|
||||
CONFIGURE_COMMAND env PATH=${EXT_INSTALL}/bin:$ENV{PATH} ${NETCDF_SOURCE_DIR}/configure
|
||||
--prefix=${NETCDF_BIN_DIR} --libdir=${NETCDF_BIN_DIR}/lib
|
||||
--enable-netcdf-4 --with-pic --disable-shared --disable-dap
|
||||
--disable-cdmremote --disable-rpc
|
||||
--disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER}
|
||||
CXX=${CMAKE_CXX_COMPILER}
|
||||
BUILD_IN_SOURCE 1
|
||||
INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
|
||||
URL_HASH SHA256=990f46d49525d6ab5dc4249f8684c6deeaf54de6fec63a187e9fb382cc0ffdff
|
||||
CMAKE_ARGS
|
||||
-DCMAKE_INSTALL_PREFIX=${EXT_INSTALL}
|
||||
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
|
||||
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
|
||||
-DCMAKE_INSTALL_LIBDIR=lib
|
||||
-DBUILD_SHARED_LIBS=OFF
|
||||
-DBUILD_TESTING=OFF
|
||||
-DBUILD_TESTSETS=OFF
|
||||
-DNETCDF_ENABLE_DAP=OFF
|
||||
-DNETCDF_ENABLE_DAP2=OFF
|
||||
-DNETCDF_ENABLE_DAP4=OFF
|
||||
-DNETCDF_ENABLE_BYTERANGE_SUPPORT=OFF
|
||||
-DNETCDF_ENABLE_BYTERANGE=OFF
|
||||
-DNETCDF_ENABLE_NCZARR_S3=OFF
|
||||
-DNETCDF_ENABLE_EXAMPLES=OFF
|
||||
-DNETCDF_ENABLE_TESTS=OFF
|
||||
-DNETCDF_ENABLE_LOGGING=ON
|
||||
BUILD_BYPRODUCTS ${EXT_INSTALL}/lib/libnetcdf.a
|
||||
#PATCH_COMMAND ${CMAKE_COMMAND}
|
||||
# -DBUILD_PREFIX=${BUILD_PREFIX}/netcdf-prefix
|
||||
# -DPATCH_FILE=${CMAKE_SOURCE_DIR}/external/patch_netcdf
|
||||
# -DSOURCE_PREFIX=${BUILD_PREFIX}/netcdf-prefix/src/netcdf/ncgen3
|
||||
# -P ${CMAKE_SOURCE_DIR}/external/check_and_apply_patch.cmake
|
||||
# CONFIGURE_COMMAND env PATH=${EXT_INSTALL}/bin:$ENV{PATH} ${NETCDF_SOURCE_DIR}/configure
|
||||
# --prefix=${NETCDF_BIN_DIR} --libdir=${NETCDF_BIN_DIR}/lib
|
||||
# --enable-netcdf-4 --with-pic --disable-shared --disable-dap
|
||||
# --disable-cdmremote --disable-rpc
|
||||
# --disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER}
|
||||
# CXX=${CMAKE_CXX_COMPILER}
|
||||
#BUILD_IN_SOURCE 1
|
||||
#INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
|
||||
)
|
||||
|
||||
ExternalProject_Add(netcdf_cxx
|
||||
DEPENDS netcdf
|
||||
PREFIX ${BUILD_PREFIX}/netcdf-cxx-prefix
|
||||
URL ${NETCDFCXX_URL}
|
||||
CONFIGURE_COMMAND env PATH=${EXT_INSTALL}/bin:$ENV{PATH} ${NETCDF_CXX_SOURCE_DIR}/configure
|
||||
--prefix=${NETCDF_BIN_DIR} --libdir=${NETCDF_BIN_DIR}/lib
|
||||
--with-pic --disable-shared
|
||||
--disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER}
|
||||
CXX=${CMAKE_CXX_COMPILER}
|
||||
BUILD_IN_SOURCE 1
|
||||
INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
|
||||
URL_HASH SHA256=29d58409c478747406f077c2d4a300991036590d4a2885b7da032033a443c77f
|
||||
CMAKE_ARGS
|
||||
-DCMAKE_INSTALL_PREFIX=${EXT_INSTALL}
|
||||
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
|
||||
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
|
||||
-DBUILD_SHARED_LIBS=OFF
|
||||
-DBUILD_TESTING=OFF
|
||||
-DBUILD_TESTSET=OFF
|
||||
-DCMAKE_INSTALL_LIBDIR=lib
|
||||
BUILD_BYPRODUCTS ${EXT_INSTALL}/lib/libnetcdf-cxx4.a
|
||||
# CONFIGURE_COMMAND env PATH=${EXT_INSTALL}/bin:$ENV{PATH} ${NETCDF_CXX_SOURCE_DIR}/configure
|
||||
# --prefix=${NETCDF_BIN_DIR} --libdir=${NETCDF_BIN_DIR}/lib
|
||||
# --with-pic --disable-shared
|
||||
# --disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER}
|
||||
# CXX=${CMAKE_CXX_COMPILER}
|
||||
# BUILD_IN_SOURCE 1
|
||||
# INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
|
||||
)
|
||||
|
||||
SET(CONFIGURE_CPP_LDFLAGS "${CONFIGURE_LDFLAGS}")
|
||||
SET(EXTRA_NC_FLAGS CPPFLAGS=${CONFIGURE_CPP_FLAGS} LDFLAGS=${CONFIGURE_CPP_LDFLAGS})
|
||||
SET(cosmotool_DEPS ${cosmotool_DEPS} netcdf netcdf_cxx)
|
||||
SET(NETCDF_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf.a CACHE STRING "NetCDF lib" FORCE)
|
||||
SET(NETCDFCPP_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf_c++4.a CACHE STRING "NetCDF-C++ lib" FORCE)
|
||||
SET(NETCDFCPP_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf-cxx4.a CACHE STRING "NetCDF-C++ lib" FORCE)
|
||||
SET(NETCDF_INCLUDE_PATH ${NETCDF_BIN_DIR}/include CACHE STRING "NetCDF include" FORCE)
|
||||
SET(NETCDFCPP_INCLUDE_PATH ${NETCDF_INCLUDE_PATH} CACHE STRING "NetCDF C++ include path" FORCE)
|
||||
|
||||
|
|
@ -297,8 +329,8 @@ message(STATUS "GSL paths: ${GSL_LIBRARY} ${GSL_CBLAS_LIBRARY} ${GSL_INCLUDE}")
|
|||
#################
|
||||
|
||||
ExternalProject_Add(cfitsio
|
||||
URL file://${CMAKE_SOURCE_DIR}/external/cfitsio-3.47.tar.gz
|
||||
URL_HASH SHA1=5a25016dcaf12117d950e4278e10d39c6c7d33a5
|
||||
URL https://github.com/HEASARC/cfitsio/archive/refs/tags/cfitsio-4.6.2.tar.gz
|
||||
URL_HASH SHA1=b8ded310b3805a2db1bcbb2c5bb4e82775048f00
|
||||
PREFIX ${BUILD_PREFIX}/cfitsio-prefix
|
||||
CONFIGURE_COMMAND ./configure --prefix=${EXT_INSTALL} --disable-curl --libdir=${EXT_INSTALL}/lib CPPFLAGS=${CONFIGURE_CPP_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
|
||||
BUILD_IN_SOURCE 1
|
||||
|
|
@ -318,19 +350,24 @@ ExternalProject_Add(healpix
|
|||
DEPENDS cfitsio
|
||||
PREFIX ${BUILD_PREFIX}/healpix-prefix
|
||||
URL ${HEALPIX_URL}
|
||||
URL_HASH SHA1=c8a537e743f760dfa453cad246065d37f72fc0cb
|
||||
CONFIGURE_COMMAND ${CMAKE_COMMAND}
|
||||
-DHEALPIX_CC=${CMAKE_C_COMPILER}
|
||||
-DHEALPIX_CXX=${CMAKE_CXX_COMPILER}
|
||||
-DHEALPIX_DIR:STRING=${HEALPIX_DIR}
|
||||
-DHEALPIX_INSTALL:STRING=${EXT_INSTALL}
|
||||
-DCFITSIO_LIB:STRING=${CFITSIO_LIBRARY}
|
||||
-P ${CMAKE_SOURCE_DIR}/external/configure_healpix.cmake
|
||||
URL_HASH SHA256=8876c18efc596fd706b2a004ac15f2fb60b795f2db6fbabea9d8ccf549531dda
|
||||
CONFIGURE_COMMAND ${CMAKE_COMMAND} -E env FITSDIR=${EXT_INSTALL}/lib FITSINC=${EXT_INSTALL}/include ./configure --auto=cxx
|
||||
BUILD_IN_SOURCE 1
|
||||
BUILD_BYPRODUCTS ${HEALPIX_DIR}/lib/libhealpix_cxx.a
|
||||
INSTALL_COMMAND true
|
||||
# CONFIGURE_COMMAND ${CMAKE_COMMAND}
|
||||
# -DHEALPIX_CC=${CMAKE_C_COMPILER}
|
||||
# -DHEALPIX_CXX=${CMAKE_CXX_COMPILER}
|
||||
# -DHEALPIX_DIR:STRING=${HEALPIX_DIR}
|
||||
# -DHEALPIX_INSTALL:STRING=${EXT_INSTALL}
|
||||
# -DCFITSIO_LIB:STRING=${CFITSIO_LIBRARY}
|
||||
# -P ${CMAKE_SOURCE_DIR}/external/configure_healpix.cmake
|
||||
# BUILD_BYPRODUCTS ${EXT_INSTALL}/lib/libhealpix_cxx.a
|
||||
)
|
||||
set(HPIX_LIBPATH ${EXT_INSTALL}/lib)
|
||||
set(HPIX_LIBPATH ${HEALPIX_DIR}/lib) # ${EXT_INSTALL}/lib)
|
||||
set(HEALPIX_LIBRARY ${HPIX_LIBPATH}/libhealpix_cxx.a)
|
||||
|
||||
SET(HEALPIX_INCLUDE_PATH ${EXT_INSTALL}/include/healpix_cxx)
|
||||
SET(HEALPIX_INCLUDE_PATH ${HEALPIX_DIR}/include ${HEALPIX_DIR}/include/healpix_cxx) # ${EXT_INSTALL}/include/healpix_cxx)
|
||||
SET(HEALPIX_LIBRARIES ${HEALPIX_LIBRARY} ${CFITSIO_LIBRARY} )
|
||||
set(GSL_LIBRARIES ${GSL_LIBRARY} ${GSL_CBLAS_LIBRARY})
|
||||
SET(NETCDF_LIBRARIES ${NETCDFCPP_LIBRARY} ${NETCDF_LIBRARY} ${HDF5_HL_LIBRARIES} ${HDF5_LIBRARIES} ${ZLIB_LIBRARY})
|
||||
|
|
@ -346,6 +383,7 @@ if (INTERNAL_QHULL)
|
|||
-DCMAKE_INSTALL_PREFIX=${CMAKE_BINARY_DIR}/ext_build/qhull
|
||||
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
|
||||
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
|
||||
-DCMAKE_POLICY_VERSION_MINIMUM=3.5
|
||||
|
||||
)
|
||||
SET(QHULL_DIR ${CMAKE_BINARY_DIR}/ext_build/qhull)
|
||||
|
|
|
|||
2
external/external_cosmotool.cmake
vendored
2
external/external_cosmotool.cmake
vendored
|
|
@ -10,7 +10,7 @@ ENDIF()
|
|||
|
||||
#v1.0.0a7.tar.bz2
|
||||
ExternalProject_Add(cosmotool
|
||||
URL https://bitbucket.org/glavaux/cosmotool/get/59bb99e.tar.gz
|
||||
URL https://git.aquila-consortium.org/guilhem_lavaux/cosmotool/archive/ee8f4c3135c0ae8e4a421df8dd3ea832d8724542.tar.gz
|
||||
DEPENDS ${cosmotool_DEPS}
|
||||
SOURCE_DIR ${COSMOTOOL_DIR}
|
||||
PREFIX ${BUILD_PREFIX}/cosmotool-prefix
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue