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https://bitbucket.org/cosmicvoids/vide_public.git
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much more flexible for handling different stacking and AP approaches
This commit is contained in:
P.M. Sutter
parent
a9100b2604
commit
73c6aedfc2
4 changed files with 132 additions and 87 deletions
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@ -36,6 +36,11 @@ dataPortions = ["central"]
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# auto for AP analysis, "fixed" for catalog comparison
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stackMode = "fixed"
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maxVoidsInStack = -1
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stackRescaleMode = "rv"
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fittingMode = "mcmc"
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minVoidsToFit = 20
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minPartToFit = 2
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# directory for the input simulation/observational particle files
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catalogDir = os.getenv("HOME")+"/workspace/Voids/catalog/"
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@ -188,6 +188,11 @@ bias = 1.16
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dataPortions = {dataPortions}
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dataSampleList = []
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# for the A-P test
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minVoidsToFit = {minVoidsToFit}
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minPartToFit = {minPartToFit}
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fittingMode = '{fittingMode}'
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"""
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scriptFile.write(header.format(startCatalogStage=startCatalogStage,
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@ -195,7 +200,11 @@ dataSampleList = []
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startAPStage=startAPStage,
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endAPStage=endAPStage,
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continueRun=continueRun,
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dataPortions=dataPortions))
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dataPortions=dataPortions,
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minVoidsToFit=minVoidsToFit,
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minPartToFit=minPartToFit,
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fittingMode=fittingMode,
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))
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dataInfo = """
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setName = "{setName}"
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@ -245,38 +254,38 @@ dataSampleList.append(newSample)
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if stackMode == "fixed":
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stackInfo = """
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# {zMin}, {zMax}, {minRadius}
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newSample.addStack(0.0, 5.0, 5 , 10, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 10, 15, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 15, 20, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 20, 25, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 25, 30, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 30, 35, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 35, 40, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 40, 45, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 45, 50, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 50, 55, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 55, 60, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 60, 65, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 65, 70, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 70, 75, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 75, 80, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 80, 85, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 85, 90, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 90, 95, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 95, 100, False, False, rescaleMode="rv")
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newSample.addStack(0.0, 5.0, 5 , 10, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 10, 15, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 15, 20, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 20, 25, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 25, 30, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 30, 35, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 35, 40, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 40, 45, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 45, 50, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 50, 55, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 55, 60, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 60, 65, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 65, 70, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 70, 75, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 75, 80, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 80, 85, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 85, 90, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 90, 95, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack(0.0, 5.0, 95, 100, False, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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"""
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elif stackMode == "sample_thick":
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stackInfo = """
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# {zMin}, {zMax}, {minRadius}
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newSample.addStack({zMin}, {zMax}, 10, 20, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 20, 30, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 30, 40, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 40, 50, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 50, 60, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 60, 70, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 70, 80, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 80, 90, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 90, 100, True, False, rescaleMode="rmax")
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newSample.addStack({zMin}, {zMax}, 10, 20, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 20, 30, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 30, 40, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 40, 50, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 50, 60, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 60, 70, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 70, 80, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 80, 90, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 90, 100, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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"""
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elif stackMode == "log":
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@ -289,18 +298,18 @@ newSample.addStack({zMin}, {zMax}, 90, 100, True, False, rescaleMode="rmax")
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while rEnd < rMax:
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rEnd = (1+0.5*dlogR)*rStart/(1-0.5*dlogR)
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stackInfo += """newSample.addStack({zMin}, {zMax}"""+ ", %g, %g, True, False, rescaleMode='rv')" % (rStart, rEnd)
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stackInfo += """newSample.addStack({zMin}, {zMax}"""+ ", %g, %g, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})" % (rStart, rEnd)
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rStart = rEnd
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elif stackMode == "auto":
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stackInfo = """
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newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+2, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+4, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+2, 2*{minRadius}+6, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+6, 2*{minRadius}+10, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+10, 2*{minRadius}+18, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+18, 2*{minRadius}+24, True, False, rescaleMode="rv")
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newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+2, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 2*{minRadius} , 2*{minRadius}+4, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+2, 2*{minRadius}+6, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+6, 2*{minRadius}+10, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+10, 2*{minRadius}+18, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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newSample.addStack({zMin}, {zMax}, 2*{minRadius}+18, 2*{minRadius}+24, True, False, rescaleMode='{rescaleMode}', maxVoids={maxVoids})
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"""
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else:
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stackInfo = """
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@ -389,7 +398,11 @@ newSample.addStack({zMin}, {zMax}, 2*{minRadius}+18, 2*{minRadius}+24, True, Fal
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sliceAPMax = "%0.2f" % sliceAPMax
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scriptFile.write(stackInfo.format(zMin=sliceAPMin,
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zMax=sliceAPMax,
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minRadius=minRadius))
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minRadius=minRadius,
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rescaleMode=stackRescaleMode,
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maxVoids=maxVoidsInStack,
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fittingMode=fittingMode
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))
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scriptFile.close()
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