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bug fix

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This commit is contained in:
P.M. Sutter 2014-05-26 08:44:14 -04:00
parent 14dcceb8cd
commit 6f004beded
2 changed files with 9 additions and 7 deletions
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6
python_tools/setup.py
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@ -33,10 +33,4 @@ setup(
packages=
['void_python_tools','void_python_tools.backend','void_python_tools.apTools', 'void_python_tools.voidUtil',
'void_python_tools.apTools.profiles','void_python_tools.apTools.chi2',],
#ext_modules = [Extension("void_python_tools.chi2.velocityProfileFitNative", ["void_python_tools/chi2/velocityProfileFitNative.pyx"], libraries=["gsl", "gslcblas"]), Extension("void_python_tools.chi2.likelihoo", ["void_python_tools/chi2/likelihood.pyx"], libraries=["gsl", "gslcblas"])]
#ext_modules = [
# Extension("void_python_tools.apTools.chi2.velocityProfileFitNative",
# ["void_python_tools/apTools/chi2/velocityProfileFitNative.pyx"],
# libraries=["gsl", "gslcblas"], library_dirs=[VOID_GSL+"/lib"], include_dirs=[VOID_GSL+"/include"])
#]
)

10
python_tools/void_python_tools/backend/launchers.py
View file

@ -343,9 +343,17 @@ def launchZobov(sample, binPath, zobovDir=None, logDir=None, continueRun=None,
subprocess.call(cmd, stdout=log, stderr=log)
log.close()
# TODO re-weight the volumes based on selection function
#volFile = zobovDir+"/vol_"+sampleName+".dat"
#File = file(volFile)
#chk = np.fromfile(File, dtype=np.int32,count=1)
#vols = np.fromfile(File, dtype=np.float32,count=numPartTot)
cmd = [binPath+"../c_tools/zobov2/jozov2/jozov2", \
zobovDir+"/adj_"+sampleName+".dat", \
zobovDir+"/vol_"+sampleName+".dat", \
zobovDir+"/vol_weighted_"+sampleName+".dat", \
#zobovDir+"/vol_"+sampleName+".dat", \
zobovDir+"/voidPart_"+sampleName+".dat", \
zobovDir+"/voidZone_"+sampleName+".dat", \
zobovDir+"/voidDesc_"+sampleName+".out", \