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Update cosmotool

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This commit is contained in:
Guilhem Lavaux 2018-07-19 15:11:04 +03:00
parent 387dc4d853
commit 64e05fc180
148 changed files with 1064 additions and 19378 deletions
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113
external/cosmotool/CMakeLists.txt vendored
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@ -1,92 +1,85 @@
cmake_minimum_required(VERSION 2.6)
list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}")
cmake_minimum_required(VERSION 3.6)
set(CMAKE_CXX_STANDARD 11)
list(INSERT CMAKE_MODULE_PATH 0 "${CMAKE_CURRENT_SOURCE_DIR}")
project(CosmoToolbox)
include(GetGitRevisionDescription)
include(ExternalProject)
include(FindOpenMP)
get_git_head_revision(HEAD GIT_VER)
include(FindPkgConfig)
include(FindPackageHandleStandardArgs)
include(color_msg)
option(BUILD_SHARED_LIBS "Build shared libraries." OFF)
option(BUILD_STATIC_LIBS "Build static libraries." ON)
option(ENABLE_OPENMP "Enable OpenMP support." OFF)
option(ENABLE_SHARP "Enable SPHT support." ON)
option(ENABLE_SHARP "Enable SHARP support." ON)
option(INTERNAL_HDF5 "Build internal version of HDF5" OFF)
option(INTERNAL_EIGEN "Build internal version of Eigen" ON)
option(INTERNAL_NETCDF "Build internal version of NETCDF" OFF)
option(INTERNAL_BOOST "Build internal version of BOOST" OFF)
option(USE_GIT_VERSION "Use GIT version to pad version number" OFF)
option(YORICK_SUPPORT "Add for pleasant yorick support" ON)
option(BUILD_PYTHON "Build the python modules" ON)
IF(USE_GIT_VERSION)
get_git_head_revision(HEAD GIT_VER)
SET(EXTRA_VERSION "-${GIT_VER}")
ENDIF(USE_GIT_VERSION)
find_path(NETCDF_INCLUDE_PATH NAMES netcdf.h)
find_path(NETCDFCPP_INCLUDE_PATH NAMES netcdfcpp.h netcdf)
find_path(GSL_INCLUDE_PATH NAMES gsl/gsl_blas.h)
IF(BUILD_PYTHON)
include(FindPythonInterp)
set(NumPy_FIND_REQUIRED TRUE)
include(${CMAKE_SOURCE_DIR}/FindPyLibs.cmake)
include(${CMAKE_SOURCE_DIR}/FindNumPy.cmake)
ENDIF(BUILD_PYTHON)
IF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
SET(FOUND_NETCDF4 1)
FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#define NETCDFCPP4 1")
ELSE(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
SET(FOUND_NETCDF3 1)
FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#undef NETCDFCPP4")
ENDIF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf)
find_library(NETCDF_LIBRARY netcdf)
find_library(NETCDFCPP_LIBRARY NAMES netcdf_c++ netcdf_c++4)
find_library(GSL_LIBRARY gsl)
find_library(GSLCBLAS_LIBRARY gslcblas)
#IF(NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS)
# SET(CosmoTool_local CosmoTool_static)
#ELSE(NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS)
SET(CosmoTool_local CosmoTool)
#ENDIF(NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS)
MESSAGE(STATUS "Using the target ${CosmoTool_local} to build python module")
include(${CMAKE_SOURCE_DIR}/external/external_build.cmake)
IF(YORICK_SUPPORT)
IF((EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4") OR (INTERNAL_NETCDF))
SET(FOUND_NETCDF4 1)
FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#define NETCDFCPP4 1")
ELSE((EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4") OR (INTERNAL_NETCDF))
SET(FOUND_NETCDF3 1)
FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#undef NETCDFCPP4")
ENDIF((EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4") OR (INTERNAL_NETCDF))
ENDIF(YORICK_SUPPORT)
find_program(CYTHON cython3 cython)
find_library(ZLIB z)
find_library(LDLIB dl)
find_library(DL_LIBRARY dl)
find_library(MATH_LIBRARY m)
if (ENABLE_SHARP)
SET(SHARP_SOURCE ${CMAKE_SOURCE_DIR}/external/sharp)
SET(DEP_BUILD ${CMAKE_SOURCE_DIR}/external/sharp/auto)
ExternalProject_Add(sharp
SOURCE_DIR ${SHARP_SOURCE}
BUILD_IN_SOURCE 1
CONFIGURE_COMMAND ${SHARP_SOURCE}/configure --prefix=${DEP_BUILD}
BUILD_COMMAND ${CMAKE_MAKE_PROGRAM}
INSTALL_COMMAND echo "No install"
)
SET(SHARP_LIBRARY ${DEP_BUILD}/lib/libsharp.a)
SET(SHARP_LIBRARIES ${SHARP_LIBRARY})
SET(SHARP_INCLUDE_PATH ${DEP_BUILD}/include)
endif (ENABLE_SHARP)
find_package(Boost 1.53)
message("INC DIRS: ${Boost_INCLUDE_DIRS}")
mark_as_advanced(Boost_INCLUDE_DIRS Boost_LIBRARIES)
if(HDF5_ROOTDIR)
SET(ENV{HDF5_ROOT} ${HDF5_ROOTDIR})
endif(HDF5_ROOTDIR)
find_package(HDF5 REQUIRED COMPONENTS HL CXX)
include(FindPkgConfig)
pkg_check_modules(FFTW3 fftw3>=3.3)
pkg_check_modules(FFTW3F fftw3f>=3.3)
pkg_check_modules(EIGEN3 eigen3)
include(FindPackageHandleStandardArgs)
set(NETCDF_FIND_REQUIRED TRUE)
set(NETCDF_FIND_REQUIRED ${YORICK_SUPPORT})
set(GSL_FIND_REQUIRED TRUE)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(NetCDF DEFAULT_MSG NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(GSL DEFAULT_MSG GSL_LIBRARY GSLCBLAS_LIBRARY GSL_INCLUDE_PATH)
set(GSL_LIBRARIES ${GSL_LIBRARY} ${GSLCBLAS_LIBRARY})
# CPACK Configuration
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A toolbox for impatient cosmologists")
SET(CPACK_PACKAGE_VENDOR "Guilhem Lavaux")
SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENCE_CeCILL_V2")
SET(CPACK_PACKAGE_VERSION_MAJOR "1")
SET(CPACK_PACKAGE_VERSION_MINOR "0")
SET(CPACK_PACKAGE_VERSION_PATCH "0-${GIT_VER}")
SET(CPACK_PACKAGE_INSTALL_DIRECTORY "CosmoToolbox-${GalaxExplorer_VERSION_MAJOR}.${GalaxExplorer_VERSION_MINOR}")
SET(CPACK_PACKAGE_VERSION_PATCH "0${EXTRA_VERSION}")
SET(CPACK_PACKAGE_INSTALL_DIRECTORY "CosmoToolbox-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}")
SET(CPACK_STRIP_FILES "lib/libCosmoTool.so")
SET(CPACK_SOURCE_IGNORE_FILES
"/CVS/;/\\\\.git/;/\\\\.svn/;\\\\.swp$;\\\\.#;/#;.*~;cscope.*;/CMakeFiles/;.*\\\\.cmake;Makefile")
add_subdirectory(src)
add_subdirectory(sample)
if(BUILD_PYTHON)
add_subdirectory(python)
endif(BUILD_PYTHON)
include(CPack)