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futher fixes for handling sub-volumes in analysis

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This commit is contained in:
P.M. Sutter 2012-11-06 14:41:09 -06:00
parent e2ee7b22dd
commit 61acd59383
8 changed files with 182 additions and 26 deletions
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5
pipeline/generateCatalog.py
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@ -107,6 +107,9 @@ if (startCatalogStage <= 4) and (endCatalogStage >= 4):
sys.stdout.flush()
for thisDataPortion in dataPortions:
plotNumberCounts(workDir, dataSampleList, figDir, showPlot=True, dataPortion=thisDataPortion, setName=setName)
plotRedshiftDistribution(workDir, dataSampleList, figDir, showPlot=False,
dataPortion=thisDataPortion, setName=catalogName)
plotSizeDistribution(workDir, dataSampleList, figDir, showPlot=False,
dataPortion=thisDataPortion, setName=catalogName)
print "\n Done!"

7
pipeline/prepareCatalogs.py
View file

@ -7,7 +7,6 @@
import numpy as np
import os
import sys
from Scientific.IO.NetCDF import NetCDFFile
import void_python_tools as vp
import argparse
@ -95,10 +94,10 @@ from void_python_tools.backend.classes import *
continueRun = False
startCatalogStage = 1
endCatalogStage = 3
endCatalogStage = 4
startAPStage = 1
endAPStage = 6
endAPStage = 7
ZOBOV_PATH = os.getenv("PWD")+"/../zobov/"
CTOOLS_PATH = os.getenv("PWD")+"/../c_tools/"
@ -297,7 +296,7 @@ if args.script or args.all:
for line in inFile: numPart += 1
inFile.close()
minRadius = int(np.ceil(lbox/numPart**(1./3.)))
minRadius = 2*int(np.ceil(lbox/numPart**(1./3.)))
if dataFormat == "multidark":
writeScript(prefix, "halos", scriptDir, catalogDir, redshifts,

5
pipeline/prepareGadgetCatalog.py
View file

@ -5,7 +5,6 @@
import numpy as np
import os
import sys
from Scientific.IO.NetCDF import NetCDFFile
import void_python_tools as vp
import argparse
@ -96,10 +95,10 @@ from void_python_tools.backend.classes import *
continueRun = False
startCatalogStage = 1
endCatalogStage = 3
endCatalogStage = 4
startAPStage = 1
endAPStage = 6
endAPStage = 7
ZOBOV_PATH = os.getenv("PWD")+"/../zobov/"
CTOOLS_PATH = os.getenv("PWD")+"/../c_tools/"