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Updated CosmoTool to last revision for support of KDTree with periodic boundaries

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Guilhem Lavaux 2013-03-05 22:43:27 -05:00
parent bea9fbdef4
commit 5b410a0008
78 changed files with 2705 additions and 8 deletions
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51
external/cosmotool/src/mykdtree.hpp vendored
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@ -1,3 +1,38 @@
/*+
This is CosmoTool (./src/mykdtree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#ifndef __HV_KDTREE_HPP
#define __HV_KDTREE_HPP
@ -65,15 +100,16 @@ namespace CosmoTool {
class RecursionMultipleInfo
{
public:
const typename KDDef<N,CType>::KDCoordinates& x;
typename KDDef<N,CType>::KDCoordinates x;
BoundedQueue< KDCell<N,ValType,CType> *, typename KDDef<N,CType>::CoordType> queue;
int traversed;
RecursionMultipleInfo(const typename KDDef<N,CType>::KDCoordinates& rx,
KDCell<N,ValType,CType> **cells,
uint32_t numCells)
: x(rx), queue(cells, numCells, INFINITY),traversed(0)
{
: queue(cells, numCells, INFINITY),traversed(0)
{
std::copy(rx, rx+N, x);
}
};
@ -97,6 +133,12 @@ namespace CosmoTool {
KDTree(Cell *cells, uint32_t Ncells);
~KDTree();
void setPeriodic(bool on, CoordType replicate)
{
periodic = on;
this->replicate = replicate;
}
uint32_t getIntersection(const coords& x, CoordType r,
Cell **cells,
uint32_t numCells)
@ -150,6 +192,9 @@ namespace CosmoTool {
Cell **sortingHelper;
Cell *base_cell;
bool periodic;
CoordType replicate;
Node *buildTree(Cell **cell0,
uint32_t NumCells,
uint32_t depth,