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re-added some essential routines; updated example sceipts to reflect new layout

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This commit is contained in:
Paul M. Sutter 2024-05-22 15:13:15 -04:00
parent 45f22a2c29
commit 541223fd07
11 changed files with 12 additions and 1308 deletions
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2
c_tools/CMakeLists.txt
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@ -45,4 +45,4 @@ add_genopt(computeAverageDistortion_SRCS computeAverageDistortion.ggo computeAve
#add_executable(computeAverageDistortion ${computeAverageDistortion_SRCS})
#target_link_libraries(computeAverageDistortion ${ZOB_LIBS})
subdirs(libzobov mock stacking)
subdirs(libzobov mock pruning jozov2)

1213
c_tools/libzobov/pruneVoids.cpp
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44
c_tools/libzobov/pruneVoids.ggo
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@ -1,44 +0,0 @@
package "removeEdgeVoids"
version "alpha"
option "configFile" - "Configuration filename" string optional
option "partFile" - "Particle file from generateFromCatalog" string required
option "extraInfo" - "Extra particle file from generateFromCatalog" string required
option "voidDesc" - "Void list from ZOBOV" string required
option "void2Zone" - "Zone file from ZOBOV" string required
option "partVol" - "Particle volume file from ZOBOV" string required
option "partAdj" - "Adjacency file from ZOBOV" string required
option "zone2Part" - "Particle file from ZOBOV" string required
option "mockIndex" - "Beginning index of mock particles" int required
option "numVoids" - "Number of voids" int required
option "isObservation" - "We are working with observational data" flag off
option "useComoving" - "Void positions are in comoving coordinates" flag off
option "omegaM" - "Omega_M for redshift convertion" double optional default="0.27"
option "zMin" - "Minimum redshift of sample" double optional default="0.0"
option "zMax" - "Maximum redshift of sample" double optional default="10.0"
option "rMin" - "Minimum allowable void radius" double optional default="0.0"
option "outputDir" - "Directory to place outputs" string required
option "sampleName" - "unique string to assign to outputs" string required
option "periodic" - "Set of edges which are periodic" string optional default="xy"
option "tolerance" - "Fraction of void width to consider edge" double optional default="1.0"
option "centralRadFrac" - "Fraction of void radii to consider central region" double optional default="4"
option "maxCentralDen" - "Maximum central density to accept as a void" double optional default="0.2"

41
c_tools/stacking/CMakeLists.txt
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@ -1,41 +0,0 @@
include_directories(${CMAKE_CURRENT_BINARY_DIR})
#SET(stackVoids_SRCS stackVoids.cpp)
#add_genopt(stackVoids_SRCS stackVoids.ggo stackVoids_conf STRUCTNAME stackVoids_info)
#add_executable(stackVoids ${stackVoids_SRCS})
#target_link_libraries(stackVoids ${ZOB_LIBS})
#SET(stackVoidsZero_SRCS stackVoidsZero.cpp)
#add_genopt(stackVoidsZero_SRCS stackVoidsZero.ggo stackVoidsZero_conf STRUCTNAME stackVoidsZero_info)
#add_executable(stackVoidsZero ${stackVoidsZero_SRCS})
#target_link_libraries(stackVoidsZero ${ZOB_LIBS})
#set(computeVelocityProfile_SRCS computeVelocityProfile.cpp)
#add_genopt(computeVelocityProfile_SRCS computeVelocityProfile.ggo computeVelocityProfile_conf STRUCT Params)
#add_executable(computeVelocityProfile ${computeVelocityProfile_SRCS})
#target_link_libraries(computeVelocityProfile ${ZOB_LIBS})
#set(stackDensityField_SRCS stackDensityField.cpp)
#add_genopt(stackDensityField_SRCS stackDensityField.ggo stackDensityField_conf STRUCT PARAMS)
#add_executable(stackDensityField ${stackDensityField_SRCS})
#target_link_libraries(stackDensityField ${ZOB_LIBS})
#set(stackVelocityField_SRCS stackVelocityField.cpp)
#add_genopt(stackVelocityField_SRCS stackVelocityField.ggo stackVelocityField_conf STRUCT PARAMS)
#add_executable(stackVelocityField ${stackVelocityField_SRCS})
#target_link_libraries(stackVelocityField ${ZOB_LIBS})
SET(pruneVoids_SRCS pruneVoids.cpp)
add_genopt(pruneVoids_SRCS pruneVoids.ggo pruneVoids_conf STRUCTNAME pruneVoids_info)
add_executable(pruneVoids ${pruneVoids_SRCS})
target_link_libraries(pruneVoids ${ZOB_LIBS})
#SET(makeAHFOutput_SRCS makeAHFOutput.cpp)
#add_genopt(makeAHFOutput_SRCS makeAHFOutput.ggo makeAHFOutput_conf STRUCTNAME makeAHFOutput_info)
#add_executable(makeAHFOutput ${makeAHFOutput_SRCS})
#target_link_libraries(makeAHFOutput ${ZOB_LIBS})
install(TARGETS pruneVoids DESTINATION ${VIDE_BIN})