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Imported Healpix, cfitsio, cosmotool. Added cmake tool to build dependencies (cfitsio, hdf5, netcdf, boost, healpix, gsl, ..). Adjusted CMakeLists.txt
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Guilhem Lavaux
parent
4bfb62f177
commit
51f6798f88
241 changed files with 243806 additions and 0 deletions
186
external/external_build.cmake
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186
external/external_build.cmake
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SET(INTERNAL_FFTW OFF)
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SET(INTERNAL_GSL ON)
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SET(INTERNAL_BOOST ON)
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SET(INTERNAL_NETCDF ON)
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SET(INTERNAL_HDF5 ON)
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IF(INTERNAL_HDF5)
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SET(HDF5_URL "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.9.tar.gz" CACHE STRING "URL to download HDF5 from")
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ENDIF(INTERNAL_HDF5)
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IF(INTERNAL_NETCDF)
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SET(NETCDF_URL "http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-4.1.3.tar.gz" CACHE STRING "URL to download NetCDF from")
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ENDIF(INTERNAL_NETCDF)
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IF(INTERNAL_BOOST)
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SET(BOOST_URL "http://sourceforge.net/projects/boost/files/boost/1.49.0/boost_1_49_0.tar.gz/download" CACHE STRING "URL to download Boost from")
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ELSE(INTERNAL_BOOST)
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find_package(Boost 1.49.0 COMPONENTS format spirit phoenix python FATAL_ERROR)
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ENDIF(INTERNAL_BOOST)
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IF(INTERNAL_GSL)
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SET(GSL_URL "ftp://ftp.gnu.org/gnu/gsl/gsl-1.15.tar.gz" CACHE STRING "URL to download GSL from ")
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ENDIF(INTERNAL_GSL)
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find_library(ZLIB_LIBRARY z)
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find_program(GENGETOPT gengetopt)
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SET(CONFIGURE_CPP_FLAGS "${EXTRA_CPP_FLAGS}")
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SET(CONFIGURE_LD_FLAGS "${EXTRA_LD_FLAGS}")
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###############
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# Build HDF5
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###############
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if (INTERNAL_HDF5)
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SET(HDF5_SOURCE_DIR ${CMAKE_BINARY_DIR}/hdf5-prefix/src/hdf5)
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SET(HDF5_BIN_DIR ${CMAKE_BINARY_DIR}/ext_build/hdf5)
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ExternalProject_Add(hdf5
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URL ${HDF5_URL}
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CONFIGURE_COMMAND ${HDF5_SOURCE_DIR}/configure --disable-shared --enable-cxx --prefix=${HDF5_BIN_DIR} CPPFLAGS=${CONFIGURE_CPP_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
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BUILD_IN_SOURCE 1
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INSTALL_COMMAND make install
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)
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SET(cosmotool_DEPS ${cosmotool_DEPS} hdf5)
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SET(hdf5_built hdf5)
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set(HDF5_LIBRARY ${HDF5_BIN_DIR}/lib/libhdf5.a CACHE STRING "HDF5 lib" FORCE)
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set(HDF5HL_LIBRARY ${HDF5_BIN_DIR}/lib/libhdf5_hl.a CACHE STRING "HDF5-HL lib" FORCE)
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SET(HDF5_INCLUDE_PATH ${HDF5_BIN_DIR}/include CACHE STRING "HDF5 include path" FORCE)
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SET(ENV{HDF5_ROOT} ${HDF5_BIN_DIR})
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SET(HDF5_ROOTDIR ${HDF5_BIN_DIR})
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SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${HDF5_BIN_DIR}/lib")
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else(INTERNAL_HDF5)
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find_path(HDF5_INCLUDE_PATH hdf5.h)
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find_library(HDF5_LIBRARY hdf5)
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find_library(HDF5HL_LIBRARY hdf5_hl)
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endif (INTERNAL_HDF5)
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SET(CONFIGURE_CPP_FLAGS "${CONFIGURE_CPP_FLAGS} -I${HDF5_INCLUDE_PATH}")
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###############
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# Build NetCDF
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###############
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if (INTERNAL_NETCDF)
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SET(NETCDF_SOURCE_DIR ${CMAKE_BINARY_DIR}/netcdf-prefix/src/netcdf)
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SET(NETCDF_BIN_DIR ${CMAKE_BINARY_DIR}/ext_build/netcdf)
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SET(CONFIGURE_CPP_FLAGS "${CONFIGURE_CPP_FLAGS} -I${NETCDF_BIN_DIR}/include")
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SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${NETCDF_BIN_DIR}/lib")
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SET(EXTRA_NC_FLAGS CPPFLAGS=${CONFIGURE_CPP_FLAGS} LDFLAGS=${CONFIGURE_LDFLAGS})
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ExternalProject_Add(netcdf
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DEPENDS ${hdf5_built}
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URL ${NETCDF_URL}
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CONFIGURE_COMMAND ${NETCDF_SOURCE_DIR}/configure --prefix=${NETCDF_BIN_DIR} --enable-netcdf-4 --disable-shared --disable-dap --disable-cdmremote --disable-rpc --disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
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BUILD_IN_SOURCE 1
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INSTALL_COMMAND make install
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)
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SET(CONFIGURE_CPP_LDFLAGS "${CONFIGURE_LDFLAGS}")
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SET(EXTRA_NC_FLAGS CPPFLAGS=${CONFIGURE_CPP_FLAGS} LDFLAGS=${CONFIGURE_CPP_LDFLAGS})
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SET(cosmotool_DEPS ${cosmotool_DEPS} netcdf)
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SET(NETCDF_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf.a CACHE STRING "NetCDF lib" FORCE)
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SET(NETCDFCPP_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf_c++.a CACHE STRING "NetCDF-C++ lib" FORCE)
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SET(NETCDF_INCLUDE_PATH ${NETCDF_BIN_DIR}/include CACHE STRING "NetCDF include" FORCE)
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SET(NETCDFCPP_INCLUDE_PATH ${NETCDF_INCLUDE_PATH} CACHE STRING "NetCDF C++ include path" FORCE)
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ELSE(INTERNAL_NETCDF)
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find_library(NETCDF_LIBRARY netcdf)
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find_library(NETCDFCPP_LIBRARY netcdf_c++)
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find_path(NETCDF_INCLUDE_PATH NAMES netcdf.h)
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find_path(NETCDFCPP_INCLUDE_PATH NAMES netcdf)
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SET(CONFIGURE_CPP_FLAGS ${CONFIGURE_CPP_FLAGS} -I${NETCDF_INCLUDE_PATH} -I${NETCDFCPP_INCLUDE_PATH})
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endif (INTERNAL_NETCDF)
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##################
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# Build BOOST
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##################
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if (INTERNAL_BOOST)
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SET(BOOST_SOURCE_DIR ${CMAKE_BINARY_DIR}/boost-prefix/src/boost)
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ExternalProject_Add(boost
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URL ${BOOST_URL}
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CONFIGURE_COMMAND ${BOOST_SOURCE_DIR}/bootstrap.sh --prefix=${CMAKE_BINARY_DIR}/ext_build/boost
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BUILD_IN_SOURCE 1
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BUILD_COMMAND ${BOOST_SOURCE_DIR}/b2 --with-exception --with-python
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INSTALL_COMMAND echo "No install"
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)
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set(Boost_INCLUDE_DIRS ${BOOST_SOURCE_DIR} CACHE STRING "Boost path" FORCE)
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set(Boost_LIBRARIES ${BOOST_SOURCE_DIR}/stage/lib/libboost_python.a)
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endif (INTERNAL_BOOST)
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##################
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# Build GSl
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##################
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IF(INTERNAL_GSL)
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SET(GSL_SOURCE_DIR ${CMAKE_BINARY_DIR}/gsl-prefix/src/gsl)
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ExternalProject_Add(gsl
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URL ${GSL_URL}
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CONFIGURE_COMMAND ${GSL_SOURCE_DIR}/configure --prefix=${CMAKE_BINARY_DIR}/ext_build/gsl --disable-shared CPPFLAGS=${CONFIGURE_CPP_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
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BUILD_IN_SOURCE 1
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BUILD_COMMAND make
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INSTALL_COMMAND make install
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)
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SET(GSL_INTERNAL_LIBS ${CMAKE_BINARY_DIR}/ext_build/gsl/lib)
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SET(GSL_LIBRARY ${GSL_INTERNAL_LIBS}/libgsl.a CACHE STRING "GSL internal path" FORCE)
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SET(GSLCBLAS_LIBRARY ${GSL_INTERNAL_LIBS}/libgslcblas.a CACHE STRING "GSL internal path" FORCE)
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set(GSL_INCLUDE_PATH ${CMAKE_BINARY_DIR}/ext_build/gsl/include CACHE STRING "GSL internal path" FORCE)
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SET(cosmotool_DEPS ${cosmotool_DEPS} gsl)
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ELSE(INTERNAL_GSL)
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find_library(GSL_LIBRARY gsl)
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find_library(GSLCBLAS_LIBRARY gslcblas)
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find_path(GSL_INCLUDE_PATH NAMES gsl/gsl_blas.h)
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ENDIF(INTERNAL_GSL)
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##################
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# Build CosmoTool
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##################
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ExternalProject_Add(cosmotool
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DEPENDS ${cosmotool_DEPS}
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SOURCE_DIR ${CMAKE_SOURCE_DIR}/external/cosmotool
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CMAKE_ARGS -DHDF5_DIR=${HDF5_ROOTDIR} -DHDF5_ROOTDIR=${HDF5_ROOTDIR} -DCMAKE_INSTALL_PREFIX=${CMAKE_BINARY_DIR}/ext_build/cosmotool -DNETCDF_INCLUDE_PATH=${NETCDF_INCLUDE_PATH} -DNETCDFCPP_INCLUDE_PATH=${NETCDFCPP_INCLUDE_PATH} -DGSL_INCLUDE_PATH=${GSL_INCLUDE_PATH} -DGSL_LIBRARY=${GSL_LIBRARY} -DGSLCBLAS_LIBRARY=${GSLCBLAS_LIBRARY} -DNETCDF_LIBRARY=${NETCDF_LIBRARY} -DNETCDFCPP_LIBRARY=${NETCDFCPP_LIBRARY}
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)
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SET(COSMOTOOL_LIBRARY ${CMAKE_BINARY_DIR}/ext_build/cosmotool/lib/libCosmoTool.a)
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set(COSMOTOOL_INCLUDE_PATH ${CMAKE_BINARY_DIR}/ext_build/cosmotool/include)
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#################
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# Build cfitsio
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#################
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ExternalProject_Add(cfitsio
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SOURCE_DIR ${CMAKE_SOURCE_DIR}/external/cfitsio
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CONFIGURE_COMMAND ${CMAKE_SOURCE_DIR}/external/cfitsio/configure --prefix=${CMAKE_BINARY_DIR}/ext_build/cfitsio CPPFLAGS=${CONFIGURE_CPP_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
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BUILD_COMMAND make
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BUILD_IN_SOURCE 1
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INSTALL_COMMAND make install
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)
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SET(CFITSIO_LIBRARY ${CMAKE_BINARY_DIR}/ext_build/cfitsio/lib/libcfitsio.a)
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#################
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# Build Healpix
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#################
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ExternalProject_Add(healpix
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DEPENDS cfitsio
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SOURCE_DIR ${CMAKE_SOURCE_DIR}/external/healpix
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CONFIGURE_COMMAND echo No configure
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BUILD_COMMAND make HEALPIX_TARGET=sampler HEALPIX_CC=${CMAKE_C_COMPILER} HEALPIX_CXX=${CMAKE_CXX_COMPILER} HEALPIX_BASE_PATH=${CMAKE_BINARY_DIR} OMP_SUPPORT=${ENABLE_OPENMP} EXTRA_CPPFLAGS=${CONFIGURE_CPP_FLAGS} OMP_FLAGS=${OpenMP_C_FLAGS}
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BUILD_IN_SOURCE 1
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INSTALL_COMMAND ${CMAKE_COMMAND} -DHEALPIX_DIR:STRING=${CMAKE_SOURCE_DIR}/external/healpix -DDEST_DIR:STRING=${CMAKE_BINARY_DIR}/ext_build/healpix -P ${CMAKE_SOURCE_DIR}/external/install_healpix.cmake
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)
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set(HPIX_LIBPATH ${CMAKE_BINARY_DIR}/ext_build/healpix/lib)
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set(HEALPIX_LIBRARY ${HPIX_LIBPATH}/libhealpix_cxx.a)
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set(FFTPACK_LIBRARY ${HPIX_LIBPATH}/libfftpack.a)
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set(CXXSUPPORT_LIBRARY ${HPIX_LIBPATH}/libcxxsupport.a)
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set(PSHT_LIBRARY ${HPIX_LIBPATH}/libpsht.a)
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set(CUTILS_LIBRARY ${HPIX_LIBPATH}/libc_utils.a)
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SET(HEALPIX_INCLUDE_PATH ${CMAKE_BINARY_DIR}/ext_build/healpix/include)
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set(GSL_LIBRARIES ${GSL_LIBRARY} ${GSLCBLAS_LIBRARY})
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SET(NETCDF_LIBRARIES ${NETCDFCPP_LIBRARY} ${NETCDF_LIBRARY} ${HDF5HL_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARY})
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include_directories(${CMAKE_BINARY_DIR}/src
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${NETCDF_INCLUDE_PATH} ${GSL_INCLUDE_PATH}
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${HDF5_INCLUDE_PATH} ${COSMOTOOL_INCLUDE_PATH}
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${Boost_INCLUDE_DIRS})
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