Imported Healpix, cfitsio, cosmotool. Added cmake tool to build dependencies (cfitsio, hdf5, netcdf, boost, healpix, gsl, ..). Adjusted CMakeLists.txt

external/cosmotool/src/hdf5_flash.h

@@ -0,0 +1,192 @@
+/* general header file for the HDF 5 IO in FLASH */
+
+
+#ifndef _HDF5_FLASH_H
+#define _HDF5_FLASH_H
+
+/* pull in some basic FLASH information */
+
+//#include "flash_defines.fh"
+
+/* define an integer file format version number, that is stored
+   in the output files.  This way, people can check this number
+   before reading, and compare against a published format to know
+   what is stored in the file.  In theory, this number should be
+   incremented anytime a change is made to the file format */
+
+/* File format history:
+
+   1 -- original version
+
+   2 -- added build records:
+         "FLASH build date"
+         "FLASH build directory"
+         "FLASH build machine"
+         "FLASH setup call"
+
+        added the "file format version" record
+
+   3 -- added the "run comment record" (why was this
+        not done long ago?)
+
+   4 -- added extrema attributes to the variable records
+
+   5 -- redshift included
+
+   6 -- added the Module data to the attributes of "/"
+
+   7 -- make build info attributes on "/"
+*/
+
+#define FILE_FORMAT_VERSION 7
+
+#define RUNTIME_PARAMETER_STRING_SIZE 80
+
+#define TIMER_NAME_STRING_SIZE 30
+
+#define MAX_STRING_LENGTH 80
+
+#define LIST_STRING_SIZE 80
+
+#define OUTPUT_PROP_LENGTH 24
+
+typedef struct real_list_t {
+  char name[LIST_STRING_SIZE];
+  double value;
+} real_list_t;
+
+typedef struct int_runtime_params_t {
+  char name[RUNTIME_PARAMETER_STRING_SIZE];
+  int value;
+} int_runtime_params_t;
+
+typedef struct real_runtime_params_t {
+  char name[RUNTIME_PARAMETER_STRING_SIZE];
+  double value;
+} real_runtime_params_t;
+
+typedef struct str_runtime_params_t {
+  char value[RUNTIME_PARAMETER_STRING_SIZE];
+  char name[RUNTIME_PARAMETER_STRING_SIZE];
+} str_runtime_params_t;
+
+typedef struct log_runtime_params_t {
+  int value;
+  char name[RUNTIME_PARAMETER_STRING_SIZE];
+} log_runtime_params_t;
+
+
+#define MAX_TIMER_PARENTS 20
+#define MAX_TIMER_CALL_STACK_DEPTH 20
+typedef struct timer_data_t {
+  char name[TIMER_NAME_STRING_SIZE];
+  double t_value[MAX_TIMER_PARENTS];
+  int    t_counts[MAX_TIMER_PARENTS];
+  int    t_on[MAX_TIMER_PARENTS];
+  int    t_stacks[MAX_TIMER_PARENTS][MAX_TIMER_CALL_STACK_DEPTH];
+  int    t_num_parents;
+  int    t_stack_sizes[MAX_TIMER_PARENTS];
+} full_timer_data_t;
+
+
+typedef struct sim_params_t {
+  int total_blocks;
+  int nsteps;
+  int nxb;
+  int nyb;
+  int nzb;
+  double time; 
+  double timestep;
+  double redshift;
+    
+} sim_params_t;
+
+typedef struct sim_params_sp_t {
+  int total_blocks;
+  int nsteps;
+  int nxb;
+  int nyb;
+  int nzb;
+  float time; 
+  float timestep;
+  float redshift;
+    
+} sim_params_sp_t;
+
+typedef struct sim_info_t {
+  int file_format_version;
+  char setup_call[400];
+  char file_creation_time[MAX_STRING_LENGTH];
+  char flash_version[MAX_STRING_LENGTH];
+  char build_date[MAX_STRING_LENGTH];
+  char build_dir[MAX_STRING_LENGTH];
+  char build_machine[MAX_STRING_LENGTH];
+  char cflags[400];
+  char fflags[400];
+  char setup_time_stamp[MAX_STRING_LENGTH];
+  char build_time_stamp[MAX_STRING_LENGTH];
+} sim_info_t;
+
+/* define some particle property constants */
+
+#if FLASH_NUMBER_OF_INT_PARTICLE_PROPS > 0
+#define NUMINTPROPS  2*((FLASH_NUMBER_OF_INT_PARTICLE_PROPS+1)/2)
+#else
+#define NUMINTPROPS  2
+#endif
+
+#if FLASH_NUMBER_OF_REAL_PARTICLE_PROPS > 0
+#define NUMREALPROPS FLASH_NUMBER_OF_REAL_PARTICLE_PROPS
+#else
+#define NUMREALPROPS 1
+#endif
+
+#define NUMACTUALINTPROPS FLASH_NUMBER_OF_INT_PARTICLE_PROPS
+#define NUMACTUALREALPROPS FLASH_NUMBER_OF_REAL_PARTICLE_PROPS
+
+
+/* set the dimension and grid variables -- the variable N_DIM is set 
+   in the compile line */
+
+
+/* mdim is the maximum dimension -- this is set in tree.fh */
+#define MDIM 3
+#define MGID 15
+
+/* 3-d problem */
+#if N_DIM == 3 
+
+#define NDIM  3
+
+#define NGID 15
+
+#define k2d 1
+#define k3d 1
+
+
+/* 2-d problem */
+#elif N_DIM == 2
+
+#define NDIM  2
+
+#define NGID 9
+
+#define k2d 1
+#define k3d 0
+
+
+/* 1-d problem */
+#else
+
+#define NDIM 1
+
+#define NGID 5
+
+#define k2d 0
+#define k3d 0
+
+#endif
+
+
+#endif
+