Imported Healpix, cfitsio, cosmotool. Added cmake tool to build dependencies (cfitsio, hdf5, netcdf, boost, healpix, gsl, ..). Adjusted CMakeLists.txt

external/cosmotool/src/h5_readFlash.hpp

@@ -0,0 +1,36 @@
+/* This file contains the functions that read the data from the HDF5 file
+ * The functions accept the PARAMESH data through arguments.
+ */
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <stddef.h>
+#include <string.h>
+#include "hdf5_flash.h"
+#include "H5Cpp.h"
+
+using namespace H5;
+
+void h5_read_runtime_parameters
+     (H5File* file,    /* file handle */
+      double* LBox,
+      int* numPart,
+      double* hubble,
+      double* omegam,
+      double* omegalambda);
+
+void h5_read_flash3_particles (H5File* file,
+                        int* totalparticles,
+                        int* localnp,
+                        int* particle_offset,
+                        float *pos1,
+                        float *pos2,
+                        float *pos3,
+                        float *vel1,
+                        float *vel2,
+                        float *vel3,
+                        int    *id);
+
+void h5_read_flash3_header_info(H5File* file,
+				double* time,                   /* simulation time */
+				double *redshift);              /* simulation redshift */