renamed python_tools to python_src to maintain consistency

python_src/misc_util/figureOutMask.py

@@ -0,0 +1,54 @@
+#!/usr/bin/env python
+#+
+#   VIDE -- Void IDentification and Examination -- ./python_tools/misc_util/figureOutMask.py
+#   Copyright (C) 2010-2014 Guilhem Lavaux
+#   Copyright (C) 2011-2014 P. M. Sutter
+#
+#   This program is free software; you can redistribute it and/or modify
+#   it under the terms of the GNU General Public License as published by
+#   the Free Software Foundation; version 2 of the License.
+# 
+#
+#   This program is distributed in the hope that it will be useful,
+#   but WITHOUT ANY WARRANTY; without even the implied warranty of
+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#   GNU General Public License for more details.
+#
+#   You should have received a copy of the GNU General Public License along
+#   with this program; if not, write to the Free Software Foundation, Inc.,
+#   51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+#+
+
+# build a low-resolution mask given the actual galaxy positions
+
+import numpy as np
+import healpy as hp
+import os
+import shutil
+import glob
+import sys
+
+galFile = "path/to/galaxy/file"
+outMaskFile = "path/to/output/mask"
+
+nside = 128
+npix = hp.nside2npix(nside)
+mask = np.zeros((npix))
+
+for line in open(galFile):
+  line = line.split()
+  RA  = np.float(line[3])
+  Dec = np.float(line[4])
+  z   = np.float(line[5])
+
+  phi   = np.pi/180.*RA
+  theta = Dec*np.pi/180.
+  theta = np.pi/2. - Dec*np.pi/180.
+  pos = np.zeros((3))
+
+  pix = hp.ang2pix(nside, theta, phi)
+  mask[pix] = 1.
+
+print "Sky Fraction:", 1.0*len(mask[mask>0])/len(mask)
+
+hp.write_map(outMaskFile, mask) 

python_src/misc_util/gather_sources.py

@@ -0,0 +1,116 @@
+#+
+#   VIDE -- Void IDentification and Examination -- ./build_tools/gather_sources.py
+#   Copyright (C) 2010-2014 Guilhem Lavaux
+#   Copyright (C) 2011-2014 P. M. Sutter
+#
+#   This program is free software; you can redistribute it and/or modify
+#   it under the terms of the GNU General Public License as published by
+#   the Free Software Foundation; version 2 of the License.
+# 
+#
+#   This program is distributed in the hope that it will be useful,
+#   but WITHOUT ANY WARRANTY; without even the implied warranty of
+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#   GNU General Public License for more details.
+#
+#   You should have received a copy of the GNU General Public License along
+#   with this program; if not, write to the Free Software Foundation, Inc.,
+#   51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+#+
+import shutil
+import tempfile
+import re
+from git import Repo,Tree,Blob
+
+def apply_license(license, relimit, filename):
+  header = re.sub(r'@FILENAME@', filename, license)
+
+  with open(filename) as f:
+    lines = f.read()
+
+  lines = re.sub(relimit, lambda x: (("" if x.group(1) is None else x.group(1)) + header), lines)
+
+  with tempfile.NamedTemporaryFile(delete=False, mode="wt", encoding="UTF-8") as tmp_sources:
+    tmp_sources.write(lines)
+
+  shutil.move(tmp_sources.name, filename)
+
+
+def apply_python_license(filename):
+  license="""#+
+#   VIDE -- Void IDentification and Examination -- @FILENAME@
+#   Copyright (C) 2010-2014 Guilhem Lavaux
+#   Copyright (C) 2011-2014 P. M. Sutter
+#
+#   This program is free software; you can redistribute it and/or modify
+#   it under the terms of the GNU General Public License as published by
+#   the Free Software Foundation; version 2 of the License.
+# 
+#
+#   This program is distributed in the hope that it will be useful,
+#   but WITHOUT ANY WARRANTY; without even the implied warranty of
+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#   GNU General Public License for more details.
+#
+#   You should have received a copy of the GNU General Public License along
+#   with this program; if not, write to the Free Software Foundation, Inc.,
+#   51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+#+
+"""
+   
+  print("Shell/Python file: %s" % filename)
+  relimit=r'^(#!.*\n)?#\+\n(#.*\n)*#\+\n'
+  apply_license(license, relimit, filename)
+
+
+def apply_cpp_license(filename):
+  license="""/*+
+    VIDE -- Void IDentification and Examination -- @FILENAME@
+    Copyright (C) 2010-2014 Guilhem Lavaux
+    Copyright (C) 2011-2014 P. M. Sutter
+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; version 2 of the License.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License along
+    with this program; if not, write to the Free Software Foundation, Inc.,
+    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
++*/
+"""
+  print("C++ file: %s" % filename)
+  relimit = r'(?s)^()/\*\+.*\+\*/\n'
+  apply_license(license, relimit, filename)
+  
+
+def analyze_tree(prefix, t):
+  for entry in t:
+    ename = entry.name
+    if ename == 'external' or ename == 'zobov':
+      continue
+    if type(entry) == Tree:
+      analyze_tree(prefix + "/" + ename, entry)
+    elif type(entry) == Blob:
+      if re.match(".*\.(sh|py|pyx)$",ename) != None:
+        fname=prefix+"/"+ename
+        apply_python_license(fname)
+      if re.match('.*\.(cpp|hpp|h)$', ename) != None:
+        fname=prefix+"/"+ename
+        apply_cpp_license(fname)
+
+
+if __name__=="__main__":
+  import sys
+  if len(sys.argv) >= 2:
+      apply_python_license(sys.argv[1])
+      sys.exit(0)
+
+  repo = Repo(".")
+  assert repo.bare == False
+  t = repo.tree()
+  analyze_tree(".", t)