renamed src to source

2025-07-04 15:21:11 +00:00 · 2024-05-22 16:15:14 -04:00 · 2024-05-22 16:15:14 -04:00 · 4d9c5ab2c1
commit 4d9c5ab2c1
parent 4dcaf3959b
71 changed files with 7 additions and 3 deletions
--- a/.gitignore
+++ b/.gitignore
@ -5,6 +5,10 @@
 .mydepend
 ./pipeline/miscTools/*.out

+build/
+cmake-build-debug
+examples/example_observation/*
+examples/examplesimulation/*
 output_*
 pipeline/ramses_simulation.py
 external/libsdf/libsw/Malloc.c
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@ -81,7 +81,7 @@ ELSE()
 ENDIF()

 SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
-configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/prepareInputs.in.py
+configure_exec(${CMAKE_SOURCE_DIR}/python_src/pipeline_source/prepareInputs.in.py
 ${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
 #configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
 #${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)
--- a/c_source/CMakeLists.txt
+++ b/c_source/CMakeLists.txt
--- a/c_source/jozov2/CMakeLists.txt
+++ b/c_source/jozov2/CMakeLists.txt
--- a/c_source/jozov2/findrtop.c
+++ b/c_source/jozov2/findrtop.c
--- a/c_source/jozov2/jozov2.cpp
+++ b/c_source/jozov2/jozov2.cpp
--- a/c_source/jozov2/jozov2.hpp
+++ b/c_source/jozov2/jozov2.hpp
--- a/c_source/jozov2/jozov2_io.cpp
+++ b/c_source/jozov2/jozov2_io.cpp
--- a/c_source/jozov2/jozov2_watershed.cpp
+++ b/c_source/jozov2/jozov2_watershed.cpp
--- a/c_source/jozov2/jozov2_zones.cpp
+++ b/c_source/jozov2/jozov2_zones.cpp
--- a/c_source/jozov2/zobov.hpp
+++ b/c_source/jozov2/zobov.hpp
--- a/c_source/prep/CMakeLists.txt
+++ b/c_source/prep/CMakeLists.txt
--- a/c_source/prep/generateMock.cpp
+++ b/c_source/prep/generateMock.cpp
--- a/c_source/prep/loaders/CMakeLists.txt
+++ b/c_source/prep/loaders/CMakeLists.txt
--- a/c_source/prep/loaders/basic_loader.cpp
+++ b/c_source/prep/loaders/basic_loader.cpp
--- a/c_source/prep/loaders/flash_loader.cpp
+++ b/c_source/prep/loaders/flash_loader.cpp
--- a/c_source/prep/loaders/gadget_loader.cpp
+++ b/c_source/prep/loaders/gadget_loader.cpp
--- a/c_source/prep/loaders/multidark_loader.cpp
+++ b/c_source/prep/loaders/multidark_loader.cpp
--- a/c_source/prep/loaders/ramses_loader.cpp
+++ b/c_source/prep/loaders/ramses_loader.cpp
--- a/c_source/prep/loaders/sdf_loader.cpp
+++ b/c_source/prep/loaders/sdf_loader.cpp
--- a/c_source/prep/loaders/sdfloader_internal.hpp
+++ b/c_source/prep/loaders/sdfloader_internal.hpp
--- a/c_source/prep/loaders/simulation_loader.cpp
+++ b/c_source/prep/loaders/simulation_loader.cpp
--- a/c_source/prep/loaders/simulation_loader.hpp
+++ b/c_source/prep/loaders/simulation_loader.hpp
--- a/c_source/prep/prepObservation.cpp
+++ b/c_source/prep/prepObservation.cpp
--- a/c_source/prep/prepObservation.ggo
+++ b/c_source/prep/prepObservation.ggo
--- a/c_source/prep/prepSimulation.cpp
+++ b/c_source/prep/prepSimulation.cpp
--- a/c_source/prep/prepSimulation.ggo
+++ b/c_source/prep/prepSimulation.ggo
--- a/c_source/pruning/CMakeLists.txt
+++ b/c_source/pruning/CMakeLists.txt
--- a/c_source/pruning/pruneVoids.cpp
+++ b/c_source/pruning/pruneVoids.cpp
--- a/c_source/pruning/pruneVoids.ggo
+++ b/c_source/pruning/pruneVoids.ggo
--- a/c_source/util/CMakeLists.txt
+++ b/c_source/util/CMakeLists.txt
--- a/c_source/util/contour_pixels.cpp
+++ b/c_source/util/contour_pixels.cpp
--- a/c_source/util/contour_pixels.hpp
+++ b/c_source/util/contour_pixels.hpp
--- a/c_source/util/gslIntegrate.hpp
+++ b/c_source/util/gslIntegrate.hpp
--- a/c_source/util/loadZobov.cpp
+++ b/c_source/util/loadZobov.cpp
--- a/c_source/util/loadZobov.hpp
+++ b/c_source/util/loadZobov.hpp
--- a/c_source/util/particleInfo.cpp
+++ b/c_source/util/particleInfo.cpp
--- a/c_source/util/particleInfo.hpp
+++ b/c_source/util/particleInfo.hpp
--- a/c_source/util/voidTree.hpp
+++ b/c_source/util/voidTree.hpp
--- a/c_source/zobov/CMakeLists.txt
+++ b/c_source/zobov/CMakeLists.txt
--- a/c_source/zobov/findrtop.c
+++ b/c_source/zobov/findrtop.c
--- a/c_source/zobov/jozov.c
+++ b/c_source/zobov/jozov.c
--- a/c_source/zobov/readfiles.c
+++ b/c_source/zobov/readfiles.c
--- a/c_source/zobov/voz.h
+++ b/c_source/zobov/voz.h
--- a/c_source/zobov/voz1b1.c
+++ b/c_source/zobov/voz1b1.c
--- a/c_source/zobov/vozinit.c
+++ b/c_source/zobov/vozinit.c
--- a/c_source/zobov/voztie.c
+++ b/c_source/zobov/voztie.c
--- a/c_source/zobov/vozutil.c
+++ b/c_source/zobov/vozutil.c
--- a/c_source/zobov/zobov_readme.txt
+++ b/c_source/zobov/zobov_readme.txt
--- a/python_source/misc_util/figureOutMask.py
+++ b/python_source/misc_util/figureOutMask.py
--- a/python_source/misc_util/gather_sources.py
+++ b/python_source/misc_util/gather_sources.py
--- a/python_source/pipeline_source/defaults.py
+++ b/python_source/pipeline_source/defaults.py
--- a/python_source/pipeline_source/prepareInputs.in.py
+++ b/python_source/pipeline_source/prepareInputs.in.py
--- a/python_source/setup.py
+++ b/python_source/setup.py
--- a/python_source/vide/init.py
+++ b/python_source/vide/init.py
--- a/python_source/vide/backend/init.py
+++ b/python_source/vide/backend/init.py
--- a/python_source/vide/backend/classes.py
+++ b/python_source/vide/backend/classes.py
--- a/python_source/vide/backend/cosmologyTools.py
+++ b/python_source/vide/backend/cosmologyTools.py
--- a/python_source/vide/backend/launchers.py
+++ b/python_source/vide/backend/launchers.py
--- a/python_source/vide/voidUtil/init.py
+++ b/python_source/vide/voidUtil/init.py
--- a/python_source/vide/voidUtil/catalogUtil.py
+++ b/python_source/vide/voidUtil/catalogUtil.py
--- a/python_source/vide/voidUtil/matchUtil.py
+++ b/python_source/vide/voidUtil/matchUtil.py
--- a/python_source/vide/voidUtil/periodic_kdtree.py
+++ b/python_source/vide/voidUtil/periodic_kdtree.py
--- a/python_source/vide/voidUtil/plotDefs.py
+++ b/python_source/vide/voidUtil/plotDefs.py
--- a/python_source/vide/voidUtil/plotUtil.py
+++ b/python_source/vide/voidUtil/plotUtil.py
--- a/python_source/vide/voidUtil/profileUtil.py
+++ b/python_source/vide/voidUtil/profileUtil.py
--- a/python_source/vide/voidUtil/xcorUtil.py
+++ b/python_source/vide/voidUtil/xcorUtil.py
--- a/python_source/vide/voidUtil/xcorlib.py
+++ b/python_source/vide/voidUtil/xcorlib.py
--- a/python_source/void_pipeline/init.py
+++ b/python_source/void_pipeline/init.py
--- a/python_source/void_pipeline/main.py
+++ b/python_source/void_pipeline/main.py
--- a/setup.py
+++ b/setup.py
@ -208,8 +208,8 @@ vide_extension = CMakeExtension(name="vide")

 setup(name='vide',
      version='2.0',
-      packages=find_packages('python_tools'),
-      package_dir={'': 'python_tools'},
+      packages=find_packages('python_src'),
+      package_dir={'': 'python_src'},
      setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'],
      install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'],
      ext_modules=[vide_extension],