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renamed src to source

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This commit is contained in:
Paul M. Sutter 2024-05-22 16:15:14 -04:00
parent 4dcaf3959b
commit 4d9c5ab2c1
71 changed files with 7 additions and 3 deletions
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4
.gitignore vendored
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@ -5,6 +5,10 @@
.mydepend .mydepend
./pipeline/miscTools/*.out ./pipeline/miscTools/*.out
build/
cmake-build-debug
examples/example_observation/*
examples/examplesimulation/*
output_* output_*
pipeline/ramses_simulation.py pipeline/ramses_simulation.py
external/libsdf/libsw/Malloc.c external/libsdf/libsw/Malloc.c

2
CMakeLists.txt
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@ -81,7 +81,7 @@ ELSE()
ENDIF() ENDIF()
SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE}) SET(PYTHONPATH ${PYTHON_LOCAL_SITE_PACKAGE})
configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/prepareInputs.in.py configure_exec(${CMAKE_SOURCE_DIR}/python_src/pipeline_source/prepareInputs.in.py
${CMAKE_BINARY_DIR}/pipeline prepareInputs.py) ${CMAKE_BINARY_DIR}/pipeline prepareInputs.py)
#configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py #configure_exec(${CMAKE_SOURCE_DIR}/python_tools/pipeline_source/applyMaskToMock.in.py
#${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py) #${CMAKE_BINARY_DIR}/pipeline applyMaskToMock.py)

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c_src/CMakeLists.txt → c_source/CMakeLists.txt
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c_src/jozov2/CMakeLists.txt → c_source/jozov2/CMakeLists.txt
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c_src/jozov2/findrtop.c → c_source/jozov2/findrtop.c
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c_src/jozov2/jozov2.cpp → c_source/jozov2/jozov2.cpp
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c_src/jozov2/jozov2.hpp → c_source/jozov2/jozov2.hpp
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c_src/jozov2/jozov2_io.cpp → c_source/jozov2/jozov2_io.cpp
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c_src/jozov2/jozov2_watershed.cpp → c_source/jozov2/jozov2_watershed.cpp
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c_src/jozov2/jozov2_zones.cpp → c_source/jozov2/jozov2_zones.cpp
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c_src/jozov2/zobov.hpp → c_source/jozov2/zobov.hpp
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c_src/prep/CMakeLists.txt → c_source/prep/CMakeLists.txt
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c_src/prep/generateMock.cpp → c_source/prep/generateMock.cpp
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c_src/prep/loaders/CMakeLists.txt → c_source/prep/loaders/CMakeLists.txt
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c_src/prep/loaders/basic_loader.cpp → c_source/prep/loaders/basic_loader.cpp
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c_src/prep/loaders/flash_loader.cpp → c_source/prep/loaders/flash_loader.cpp
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c_src/prep/loaders/gadget_loader.cpp → c_source/prep/loaders/gadget_loader.cpp
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c_src/prep/loaders/multidark_loader.cpp → c_source/prep/loaders/multidark_loader.cpp
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c_src/prep/loaders/ramses_loader.cpp → c_source/prep/loaders/ramses_loader.cpp
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c_src/prep/loaders/sdf_loader.cpp → c_source/prep/loaders/sdf_loader.cpp
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c_src/prep/loaders/sdfloader_internal.hpp → c_source/prep/loaders/sdfloader_internal.hpp
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c_src/prep/loaders/simulation_loader.cpp → c_source/prep/loaders/simulation_loader.cpp
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c_src/prep/loaders/simulation_loader.hpp → c_source/prep/loaders/simulation_loader.hpp
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c_src/prep/prepObservation.cpp → c_source/prep/prepObservation.cpp
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c_src/prep/prepObservation.ggo → c_source/prep/prepObservation.ggo
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c_src/prep/prepSimulation.cpp → c_source/prep/prepSimulation.cpp
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c_src/prep/prepSimulation.ggo → c_source/prep/prepSimulation.ggo
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c_src/pruning/CMakeLists.txt → c_source/pruning/CMakeLists.txt
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c_src/pruning/pruneVoids.cpp → c_source/pruning/pruneVoids.cpp
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c_src/pruning/pruneVoids.ggo → c_source/pruning/pruneVoids.ggo
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c_src/util/CMakeLists.txt → c_source/util/CMakeLists.txt
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c_src/util/contour_pixels.cpp → c_source/util/contour_pixels.cpp
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c_src/util/contour_pixels.hpp → c_source/util/contour_pixels.hpp
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c_src/util/gslIntegrate.hpp → c_source/util/gslIntegrate.hpp
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c_src/util/loadZobov.cpp → c_source/util/loadZobov.cpp
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c_src/util/loadZobov.hpp → c_source/util/loadZobov.hpp
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c_src/util/particleInfo.cpp → c_source/util/particleInfo.cpp
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c_src/util/particleInfo.hpp → c_source/util/particleInfo.hpp
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c_src/util/voidTree.hpp → c_source/util/voidTree.hpp
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c_src/zobov/CMakeLists.txt → c_source/zobov/CMakeLists.txt
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c_src/zobov/findrtop.c → c_source/zobov/findrtop.c
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c_src/zobov/jozov.c → c_source/zobov/jozov.c
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c_src/zobov/readfiles.c → c_source/zobov/readfiles.c
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c_src/zobov/voz.h → c_source/zobov/voz.h
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c_src/zobov/voz1b1.c → c_source/zobov/voz1b1.c
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c_src/zobov/vozinit.c → c_source/zobov/vozinit.c
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c_src/zobov/voztie.c → c_source/zobov/voztie.c
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c_src/zobov/vozutil.c → c_source/zobov/vozutil.c
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c_src/zobov/zobov_readme.txt → c_source/zobov/zobov_readme.txt
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python_src/misc_util/figureOutMask.py → python_source/misc_util/figureOutMask.py
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python_src/misc_util/gather_sources.py → python_source/misc_util/gather_sources.py
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python_src/pipeline_source/defaults.py → python_source/pipeline_source/defaults.py
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python_src/pipeline_source/prepareInputs.in.py → python_source/pipeline_source/prepareInputs.in.py
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python_src/setup.py → python_source/setup.py
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python_src/vide/__init__.py → python_source/vide/__init__.py
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python_src/vide/backend/__init__.py → python_source/vide/backend/__init__.py
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python_src/vide/backend/classes.py → python_source/vide/backend/classes.py
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python_src/vide/backend/cosmologyTools.py → python_source/vide/backend/cosmologyTools.py
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python_src/vide/backend/launchers.py → python_source/vide/backend/launchers.py
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python_src/vide/voidUtil/__init__.py → python_source/vide/voidUtil/__init__.py
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python_src/vide/voidUtil/catalogUtil.py → python_source/vide/voidUtil/catalogUtil.py
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python_src/vide/voidUtil/matchUtil.py → python_source/vide/voidUtil/matchUtil.py
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python_src/vide/voidUtil/periodic_kdtree.py → python_source/vide/voidUtil/periodic_kdtree.py
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python_src/vide/voidUtil/plotDefs.py → python_source/vide/voidUtil/plotDefs.py
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python_src/vide/voidUtil/plotUtil.py → python_source/vide/voidUtil/plotUtil.py
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python_src/vide/voidUtil/profileUtil.py → python_source/vide/voidUtil/profileUtil.py
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python_src/vide/voidUtil/xcorUtil.py → python_source/vide/voidUtil/xcorUtil.py
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python_src/vide/voidUtil/xcorlib.py → python_source/vide/voidUtil/xcorlib.py
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python_src/void_pipeline/__init__.py → python_source/void_pipeline/__init__.py
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python_src/void_pipeline/__main__.py → python_source/void_pipeline/__main__.py
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4
setup.py
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@ -208,8 +208,8 @@ vide_extension = CMakeExtension(name="vide")
setup(name='vide', setup(name='vide',
version='2.0', version='2.0',
packages=find_packages('python_tools'), packages=find_packages('python_src'),
package_dir={'': 'python_tools'}, package_dir={'': 'python_src'},
setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'], setup_requires=['cython','setuptools','healpy','argparse','scipy','astropy','extension-helpers','netCDF4'],
install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'], install_requires=['argparse','scipy','astropy','extension-helpers','netCDF4','healpy'],
ext_modules=[vide_extension], ext_modules=[vide_extension],