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halos and hod now only take parent halos

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P.M. Sutter 2013-06-19 06:47:56 -05:00
parent 918a5730bc
commit 4c97bcb798
1 changed files with 7 additions and 7 deletions
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14
python_tools/pipeline_source/prepareCatalogs.in.py
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@ -105,7 +105,7 @@ def getNickName(setName, sampleName):
if "none" in splitName[2]: if "none" in splitName[2]:
nickName += " All Halos" nickName += " All Halos"
else: else:
nickName += " Halos > " + splitName[2].replace("min","") nickName += " Halos > " + splitName[2].replace("min","").replace("+","")
if "pv" in splitName[3]: if "pv" in splitName[3]:
nickName += ", z = " + splitName[4].replace("z","") + " (w/ PV)" nickName += ", z = " + splitName[4].replace("z","") + " (w/ PV)"
else: else:
@ -539,9 +539,9 @@ if (args.script or args.all) and haloFileBase != "":
if dataFormat == "sdf": if dataFormat == "sdf":
SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64" SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64"
if minHaloMass == "none": if minHaloMass == "none":
command = "%s -a 200000 %s mass | wc" % (SDFcvt_PATH, dataFile) command = "%s -a 200000 %s mass parent_id | awk '{if ($2==-1) print $1}' | wc" % (SDFcvt_PATH, dataFile)
else: else:
command = "%s -a 200000 %s mass | awk '{if ($1>%g) print $1}' | wc" % (SDFcvt_PATH, dataFile, minHaloMass) command = "%s -a 200000 %s mass parent_id | awk '{if ($1>%g && $2==-1) print $1}' | wc" % (SDFcvt_PATH, dataFile, minHaloMass)
numPart = subprocess.check_output(command, shell=True) numPart = subprocess.check_output(command, shell=True)
numPart = int(numPart.split()[0]) numPart = int(numPart.split()[0])
else: else:
@ -635,9 +635,9 @@ if (args.halos or args.all) and haloFileBase != "":
if dataFormat == "sdf": if dataFormat == "sdf":
SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64" SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64"
if minHaloMass == "none": if minHaloMass == "none":
command = "%s -a 200000 %s mass ident x y z vz vy vx | awk '{print $2, $3, $4, $5, $6, $7, $8, $1}'>>%s" % (SDFcvt_PATH, dataFile, outFileName ) command = "%s -a 200000 %s mass ident x y z vz vy vx parent_id | awk '{if ($9==-1) print $2, $3, $4, $5, $6, $7, $8, $1}'>>%s" % (SDFcvt_PATH, dataFile, outFileName )
else: else:
command = "%s -a 200000 %s mass ident x y z vz vy vx | awk '{if ($1>%g) print $2, $3, $4, $5, $6, $7, $8, $1}'>>%s" % (SDFcvt_PATH, dataFile, minHaloMass, outFileName ) command = "%s -a 200000 %s mass ident x y z vz vy vx parent_id | awk '{if ($1>%g && $9==-1) print $2, $3, $4, $5, $6, $7, $8, $1}'>>%s" % (SDFcvt_PATH, dataFile, minHaloMass, outFileName )
os.system(command) os.system(command)
outFile = open(outFileName, 'a') outFile = open(outFileName, 'a')
outFile.write("-99 -99 -99 -99 -99 -99 -99 -99\n") outFile.write("-99 -99 -99 -99 -99 -99 -99 -99\n")
@ -730,7 +730,7 @@ if (args.script or args.all) and haloFileBase != "":
numPart = 0 numPart = 0
if dataFormat == "sdf": if dataFormat == "sdf":
SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64" SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64"
command = "%s -a 200000 %s mass | awk '{if ($1>%g) print $1}' | wc" % (SDFcvt_PATH, dataFile, thisHod['Mcut']) command = "%s -a 200000 %s mass parent_id | awk '{if ($1>%g && $2==-1) print $1}' | wc" % (SDFcvt_PATH, dataFile, thisHod['Mcut'])
numPart = subprocess.check_output(command, shell=True) numPart = subprocess.check_output(command, shell=True)
numPart = int(numPart.split()[0]) numPart = int(numPart.split()[0])
else: else:
@ -771,7 +771,7 @@ if (args.hod or args.all) and haloFileBase != "":
inFile = haloFile inFile = haloFile
outFile = haloFile+"_temp" outFile = haloFile+"_temp"
SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64" SDFcvt_PATH = "@CMAKE_BINARY_DIR@/external/libsdf/apps/SDFcvt/SDFcvt.x86_64"
command = "%s -a 200000 %s mass x y z vx vy vz>>%s" % (SDFcvt_PATH, inFile, outFile) command = "%s -a 200000 %s mass x y z vx vy vz parent_id | awk '{if ($8 ==-1) print $1, $2, $3, $4, $5, $6, $7}'>>%s" % (SDFcvt_PATH, inFile, outFile)
os.system(command) os.system(command)
haloFile = outFile haloFile = outFile