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https://bitbucket.org/cosmicvoids/vide_public.git
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removal of some cross-comparison scripts
This commit is contained in:
P.M. Sutter
parent
4d6e653bda
commit
41e179da64
5 changed files with 0 additions and 495 deletions
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@ -1,129 +0,0 @@
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#!/usr/bin/env python
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#+
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# VIDE -- Void IDEntification pipeline -- ./pipeline/apAnalysis.py
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# Copyright (C) 2010-2013 Guilhem Lavaux
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# Copyright (C) 2011-2013 P. M. Sutter
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; version 2 of the License.
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#
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#+
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# takes a set of voids with given radii, and stacks and plots matches in
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# other catalogs
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from void_python_tools.backend import *
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import imp
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import pickle
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import os
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import numpy as np
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import argparse
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# ------------------------------------------------------------------------------
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mergerNameBase = "mergerTree"
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parser = argparse.ArgumentParser(description='Analyze.')
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parser.add_argument('--parm', dest='parm', default='datasetsToAnalyze.py', help='path to parameter file')
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args = parser.parse_args()
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# ------------------------------------------------------------------------------
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filename = args.parm
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print " Loading parameters from", filename
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if not os.access(filename, os.F_OK):
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print " Cannot find parameter file %s!" % filename
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exit(-1)
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parms = imp.load_source("name", filename)
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globals().update(vars(parms))
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if not os.access(dataDir, os.F_OK):
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os.makedirs(dataDir)
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if not os.access(logDir, os.F_OK):
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os.makedirs(logDir)
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mergerFileBase = dataDir + "/" + mergerNameBase
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# get list of base voids
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with open(workDir+baseSampleDir+"/sample_info.dat", 'rb') as input:
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baseSample = pickle.load(input)
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baseSampleName = baseSample.fullName
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baseVoidList = np.loadtxt(workDir+baseSampleDir+"/untrimmed_centers_central_"+\
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baseSampleName+".out")
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for stack in baseSample.stacks:
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print " Stack:", stack.rMin
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accepted = (baseVoidList[:,4] > stack.rMin) & (baseVoidList[:,4] < stack.rMax)
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baseIDList = baseVoidList[:,7][accepted]
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for (iSample, sampleDir) in enumerate(sampleDirList):
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with open(workDir+sampleDir+"/sample_info.dat", 'rb') as input:
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sample = pickle.load(input)
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print " Working with", sample.fullName, "..."
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sys.stdout.flush()
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sampleName = sample.fullName
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# get list of appropriate voids
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if sample.fullName == baseSample.fullName:
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idList = baseIDList
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else:
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matchList = np.loadtxt(mergerFileBase+"_"+baseSampleName+"_"+sampleName+\
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"_summary.out")
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idList = []
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for i,testID in enumerate(matchList[:,8]):
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if np.any(testID == baseIDList):
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idList.append(matchList[i,0])
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idList = np.array(idList)
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idList = idList.astype(int)
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print " Found", len(idList), "voids to work with"
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voidBaseDir = workDir+"/"+sampleDir+"stacks"
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runSuffix = getStackSuffix(stack.zMin, stack.zMax, stack.rMin,
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stack.rMax, dataPortion,
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customLine="selected")
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voidDir = voidBaseDir+"_"+runSuffix
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if not os.access(voidDir,os.F_OK): os.makedirs(voidDir)
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if len(idList) == 0:
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print " No voids here anyway, skipping..."
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continue
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print " Stacking voids...",
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sys.stdout.flush()
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STACK_PATH = CTOOLS_PATH+"/stacking/stackVoidsZero"
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launchStack(sample, stack, STACK_PATH,
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thisDataPortion=dataPortion,
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logDir=logDir, voidDir=voidDir,
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zobovDir=workDir+"/"+sampleDir,
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freshStack=True, INCOHERENT=False,
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ranSeed=101010, summaryFile=None,
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continueRun=False,
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dataType=sample.dataType,
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idList=idList, rescaleOverride="")
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print " Profiling stacks...",
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sys.stdout.flush()
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logFile = logDir+"/profile_"+sampleName+"_"+runSuffix+".out"
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launchProfile(sample, stack, voidDir=voidDir,
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logFile=logFile, continueRun=False)
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print " Done!"
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@ -1,44 +0,0 @@
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#+
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# VIDE -- Void IDEntification pipeline -- ./crossCompare/analysis/datasetsToAnalyze.py
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# Copyright (C) 2010-2013 Guilhem Lavaux
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# Copyright (C) 2011-2013 P. M. Sutter
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; version 2 of the License.
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#
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#+
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#!/usr/bin/env python
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workDir = "/home/psutter2/workspace/Voids/"
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dataDir = "/home/psutter2/workspace/Voids/crossCompare/mergerTree/"
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CTOOLS_PATH = "../../c_tools/"
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baseSampleDir = "mergertree512/mt_ss0.1/sample_md_ss0.1_z0.00_d00/"
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sampleDirList = [
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"mergertree512/mt_ss1e-05/sample_md_ss1e-05_z0.00_d00/",
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#"mergertree512/mt_ss0.000175/sample_md_ss0.000175_z0.00_d00/",
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#"mergertree512/mt_ss0.0004/sample_md_ss0.0004_z0.00_d00/",
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#"mergertree512/mt_ss0.001/sample_md_ss0.001_z0.00_d00/",
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#"mergertree512/mt_ss0.002/sample_md_ss0.002_z0.00_d00/",
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"mergertree512/mt_ss0.01/sample_md_ss0.01_z0.00_d00/",
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"mergertree512/mt_hod_dr72dim2/sample_md_hod_dr72dim2_z0.00_d00/",
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"mergertree512/mt_hod_dr9mid/sample_md_hod_dr9mid_z0.00_d00/",
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"mergertree512/mt_halos_min1.2e+13/sample_md_halos_min1.2e+13_z0.00_d00/",
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]
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dataPortion = "central"
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@ -1,104 +0,0 @@
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#!/usr/bin/env python
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#+
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# VIDE -- Void IDEntification pipeline -- ./crossCompare/analysis/mergerTree.py
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# Copyright (C) 2010-2013 Guilhem Lavaux
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# Copyright (C) 2011-2013 P. M. Sutter
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; version 2 of the License.
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#
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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#+
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from void_python_tools.backend import *
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from void_python_tools.plotting import *
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import imp
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import pickle
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import os
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import matplotlib.pyplot as plt
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import numpy as np
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import argparse
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# ------------------------------------------------------------------------------
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dataNameBase = "mergerTree"
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parser = argparse.ArgumentParser(description='Analyze.')
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parser.add_argument('--parm', dest='parm', default='datasetsToAnalyze.py',
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help='path to parameter file')
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args = parser.parse_args()
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# ------------------------------------------------------------------------------
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filename = args.parm
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print " Loading parameters from", filename
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if not os.access(filename, os.F_OK):
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print " Cannot find parameter file %s!" % filename
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exit(-1)
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parms = imp.load_source("name", filename)
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globals().update(vars(parms))
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if not os.access(dataDir, os.F_OK):
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os.makedirs(dataDir)
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outFileName = dataDir + "/" + dataNameBase #+ ".dat"
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with open(workDir+baseSampleDir+"/sample_info.dat", 'rb') as input:
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baseSample = pickle.load(input)
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for (iSample, sampleDir) in enumerate(sampleDirList):
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with open(workDir+sampleDir+"/sample_info.dat", 'rb') as input:
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sample = pickle.load(input)
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print " Working with", sample.fullName, "...",
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sys.stdout.flush()
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sampleName = sample.fullName
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binPath = CTOOLS_PATH+"/analysis/voidOverlap"
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logFile = logDir+"/mergertree_"+baseSample.fullName+"_"+sampleName+".out"
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stepOutputFileName = outFileName + "_" + baseSample.fullName + "_" + \
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sampleName + "_"
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#stepOutputFileName = os.getcwd()+"/data/overlap_"
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launchVoidOverlap(sample, baseSample, workDir+sampleDir,
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workDir+baseSampleDir, binPath,
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thisDataPortion="central", logFile=logFile,
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continueRun=False, workDir=workDir,
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outputFile=stepOutputFileName,
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matchMethod="useID")
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#matchMethod="prox")
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# attach columns to summary file
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#if iSample == 1:
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# os.system("cp %s %s" % (stepOutputFileName, outFileName))
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#else:
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# outFile = open("temp.out", "w")
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# stepOutFile1 = open(outFileName, "r")
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# stepOutFile2 = open(stepOutputFileName, "r")
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#
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# for line1 in stepOutFile1:
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# line1 = line1.rstrip()
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# line2 = stepOutFile2.readline()
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# outFile.write(line1+" "+line2)
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#
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# os.system("cp %s %s" % ("temp.out", outFileName))
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# outFile.close()
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# stepOutFile1.close()
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# stepOutFile2.close()
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#if os.access("mergerTree.log", os.F_OK): os.unlink("mergerTree.log")
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#if os.access("temp.out", os.F_OK): os.unlink("temp.out")
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#if os.access("thisStep.out", os.F_OK): os.unlink("thisStep.out")
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print " Done!"
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