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significant speedups to void matching algorithm

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This commit is contained in:
P.M. Sutter 2012-12-20 13:38:14 -06:00
parent e9b2697bc7
commit 3c8d7b2fb2
1 changed files with 55 additions and 67 deletions
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112
c_tools/analysis/voidOverlap.cpp
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@ -88,6 +88,8 @@ int main(int argc, char **argv) {
int closestMatchID; int closestMatchID;
float closestMatchDist; float closestMatchDist;
float commonVolRatio; float commonVolRatio;
MATCHPROPS newMatch;
int MAX_MATCHES = 20;
CATALOG catalog1, catalog2; CATALOG catalog1, catalog2;
@ -134,38 +136,44 @@ int main(int argc, char **argv) {
printf("Will assume z-direction is periodic.\n"); printf("Will assume z-direction is periodic.\n");
} }
printf(" Determining overlap...\n"); // find closest voids
printf(" Finding nearest matches...\n");
/*
// just use centers
for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) { for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
closestMatchDist = 1.e99;
for (iVoid2 = 0; iVoid2 < catalog2.numVoids; iVoid2++) { for (iVoid2 = 0; iVoid2 < catalog2.numVoids; iVoid2++) {
rdist = getDist(catalog1, catalog2, iVoid1, iVoid2, rdist = getDist(catalog1, catalog2, iVoid1, iVoid2,
periodicX, periodicY, periodicZ); periodicX, periodicY, periodicZ);
if (rdist < closestMatchDist) {
closestMatchID = iVoid2;
closestMatchDist = rdist;
}
} newMatch.matchID = iVoid2;
newMatch.commonVol = 0;
newMatch.dist = rdist;
MATCHPROPS newMatch; if (catalog1.voids[iVoid1].matches.size() < MAX_MATCHES) {
newMatch.matchID = closestMatchID;
newMatch.commonVol = 1;
newMatch.dist = closestMatchDist;
catalog1.voids[iVoid1].matches.push_back(newMatch); catalog1.voids[iVoid1].matches.push_back(newMatch);
} else {
// find the farthest match
float farthestMatchDist = 0;
int farthestMatchID = 0;
for (iMatch = 0; iMatch < MAX_MATCHES; iMatch++) {
if (catalog1.voids[iVoid1].matches[iMatch].dist > farthestMatchDist){
farthestMatchDist = catalog1.voids[iVoid1].matches[iMatch].dist;
farthestMatchID = iMatch;
}
}
if (rdist < farthestMatchDist)
catalog1.voids[iVoid1].matches[farthestMatchID] = newMatch;
}
}
} }
*/
printf(" Determining overlap...\n");
for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) { for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
printf(" Working on void %d of %d...\n", iVoid1, catalog1.numVoids); printf(" Working on void %d of %d...\n", iVoid1+1, catalog1.numVoids);
voidID1 = catalog1.voids[iVoid1].voidID; voidID1 = catalog1.voids[iVoid1].voidID;
for (iVoid2 = 0; iVoid2 < catalog2.numVoids; iVoid2++) { for (iMatch = 0; iMatch < catalog1.voids[iVoid1].matches.size();iMatch++) {
iVoid2 = catalog1.voids[iVoid1].matches[iMatch].matchID;
voidID2 = catalog2.voids[iVoid2].voidID; voidID2 = catalog2.voids[iVoid2].voidID;
match = false;
for (iZ1 = 0; iZ1 < catalog1.void2Zones[voidID1].numZones; iZ1++) { for (iZ1 = 0; iZ1 < catalog1.void2Zones[voidID1].numZones; iZ1++) {
zoneID1 = catalog1.void2Zones[voidID1].zoneIDs[iZ1]; zoneID1 = catalog1.void2Zones[voidID1].zoneIDs[iZ1];
@ -180,6 +188,7 @@ int main(int argc, char **argv) {
partID2 = catalog2.zones2Parts[zoneID2].partIDs[p2]; partID2 = catalog2.zones2Parts[zoneID2].partIDs[p2];
match = false; match = false;
if (args.useID_flag) { if (args.useID_flag) {
if (catalog1.part[partID1].uniqueID == if (catalog1.part[partID1].uniqueID ==
catalog2.part[partID2].uniqueID) match = true; catalog2.part[partID2].uniqueID) match = true;
@ -205,33 +214,10 @@ int main(int argc, char **argv) {
if (rdist <= 0.1*r1 || rdist <= 0.1*r2) match = true; if (rdist <= 0.1*r1 || rdist <= 0.1*r2) match = true;
} }
if (match) { if (match) {
bool alreadyMatched = false;
for (iMatch = 0;
iMatch < catalog1.voids[iVoid1].matches.size(); iMatch++) {
if (catalog1.voids[iVoid1].matches[iMatch].matchID ==
iVoid2) {
alreadyMatched = true;
break;
}
}
if (alreadyMatched) {
//catalog1.voids[iVoid1].matches[iMatch].commonVol += 1;
catalog1.voids[iVoid1].matches[iMatch].commonVol += catalog1.voids[iVoid1].matches[iMatch].commonVol +=
catalog1.part[partID1].volume; catalog2.part[partID2].volume;
} else {
MATCHPROPS newMatch;
newMatch.matchID = iVoid2;
//newMatch.commonVol = 1;
newMatch.commonVol = catalog1.part[partID1].volume;
newMatch.dist = getDist(catalog1, catalog2, iVoid1, iVoid2,
periodicX, periodicY, periodicZ);
catalog1.voids[iVoid1].matches.push_back(newMatch);
} // end if match } // end if match
}
} // end p2 } // end p2
} // end iZ2 } // end iZ2
@ -240,11 +226,13 @@ int main(int argc, char **argv) {
} // end iVoid2 } // end iVoid2
} // end match finding } // end match finding
printf(" Sorting matches...\n");
for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) { for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
sortMatches(catalog1.voids[iVoid1].matches); sortMatches(catalog1.voids[iVoid1].matches);
} }
// count up significant matches // count up significant matches
printf(" Categorizing matches...\n");
for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) { for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
closestMatchDist = 0.; closestMatchDist = 0.;
for (iMatch = 0; iMatch < catalog1.voids[iVoid1].matches.size(); iMatch++) { for (iMatch = 0; iMatch < catalog1.voids[iVoid1].matches.size(); iMatch++) {
@ -257,12 +245,12 @@ int main(int argc, char **argv) {
} }
// output summary // output summary
printf(" Output...\n");
std::string filename; std::string filename;
filename = string(args.outfile_arg); filename = string(args.outfile_arg);
filename = filename.append("_summary.out"); filename = filename.append("summary.out");
fp = fopen(filename.c_str(), "w"); fp = fopen(filename.c_str(), "w");
//fp = fopen(args.outfile_arg, "w"); fprintf(fp, "# void ID, radius, radius ratio, common volume ratio, common volume ratio 2, relative dist, num matches, num significant matches\n");
fprintf(fp, "# void ID, radius, radius ratio, common volume ratio, relative dist, num matches, num significant matches\n");
for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) { for (iVoid1 = 0; iVoid1 < catalog1.numVoids; iVoid1++) {
int voidID = catalog1.voids[iVoid1].voidID; int voidID = catalog1.voids[iVoid1].voidID;
if (catalog1.voids[iVoid1].numMatches > 0) { if (catalog1.voids[iVoid1].numMatches > 0) {
@ -272,27 +260,31 @@ int main(int argc, char **argv) {
commonVolRatio = catalog1.voids[iVoid1].matches[0].commonVol / commonVolRatio = catalog1.voids[iVoid1].matches[0].commonVol /
//catalog1.voids[iVoid1].numPart; //catalog1.voids[iVoid1].numPart;
catalog1.voids[iVoid1].vol; catalog1.voids[iVoid1].vol;
float volRatio = catalog1.voids[iVoid1].matches[0].commonVol /
catalog2.voids[iVoid2].vol;
rdist = catalog1.voids[iVoid1].matches[0].dist; rdist = catalog1.voids[iVoid1].matches[0].dist;
rdist /= catalog1.voids[iVoid1].radius; rdist /= catalog1.voids[iVoid1].radius;
fprintf(fp, "%d %.2f %.2f %.2f %.2f %d %d\n", voidID, fprintf(fp, "%d %.2f %.2f %.2f %.2f %.2f %d %d\n", voidID,
catalog1.voids[iVoid1].radiusMpc, catalog1.voids[iVoid1].radiusMpc,
rRatio, rRatio,
commonVolRatio, commonVolRatio,
volRatio,
rdist, rdist,
catalog1.voids[iVoid1].numMatches, catalog1.voids[iVoid1].numMatches,
catalog1.voids[iVoid1].numBigMatches); catalog1.voids[iVoid1].numBigMatches);
} else { } else {
fprintf(fp, "%d %f 0.0 0.0 0.0 0 0\n", voidID, fprintf(fp, "%d %.2f 0.0 0.0 0.0 0.0 0 0\n", voidID,
catalog1.voids[iVoid1].radius); catalog1.voids[iVoid1].radiusMpc);
} }
} // end printing } // end printing
fclose(fp); fclose(fp);
// output detail // output detail
printf(" Output detail...\n");
filename = string(args.outfile_arg); filename = string(args.outfile_arg);
filename = filename.append("_detail.out"); filename = filename.append("detail.out");
fp = fopen(filename.c_str(), "w"); fp = fopen(filename.c_str(), "w");
int MAX_OUT = 10; int MAX_OUT = 10;
fprintf(fp, "# void ID, match common vol\n"); fprintf(fp, "# void ID, match common vol\n");
@ -300,14 +292,13 @@ int main(int argc, char **argv) {
int voidID = catalog1.voids[iVoid1].voidID; int voidID = catalog1.voids[iVoid1].voidID;
fprintf(fp,"%d: ", voidID); fprintf(fp,"%d: ", voidID);
for (iMatch = 0; iMatch < MAX_OUT; iMatch++) { for (iMatch = 0; iMatch < MAX_OUT; iMatch++) {
if (iMatch < catalog1.voids[iVoid1].matches.size()) {
if (iMatch < catalog1.voids[iVoid].matches.size()) {
commonVolRatio = catalog1.voids[iVoid1].matches[iMatch].commonVol / commonVolRatio = catalog1.voids[iVoid1].matches[iMatch].commonVol /
//catalog1.voids[iVoid1].numPart; //catalog1.voids[iVoid1].numPart;
catalog1.voids[iVoid1].vol; catalog1.voids[iVoid1].vol;
fprintf(fp, "%.2f ", commonVolRatio); fprintf(fp, "%.3f ", catalog1.voids[iVoid1].matches[iMatch].dist);
//fprintf(fp, "%.2f ", commonVolRatio);
} else { } else {
fprintf(fp, "0.00 "); fprintf(fp, "0.00 ");
} }
@ -443,10 +434,6 @@ void loadCatalog(const char *partFile, const char *volFile,
catalog.voids[i].voidProb = voidProb; catalog.voids[i].voidProb = voidProb;
catalog.voids[i].radius = pow(voidVol/catalog.numPartTot*3./4./M_PI, 1./3.); catalog.voids[i].radius = pow(voidVol/catalog.numPartTot*3./4./M_PI, 1./3.);
//catalog.voids[i].biggestMatchID = -1;
//catalog.voids[i].biggestMatchVol = 0;
//catalog.voids[i].closestMatchID = -1;
//catalog.voids[i].closestMatchDist = 1.e99;
catalog.voids[i].numMatches = 0; catalog.voids[i].numMatches = 0;
catalog.voids[i].numBigMatches = 0; catalog.voids[i].numBigMatches = 0;
@ -548,14 +535,15 @@ void sortMatches(std::vector<MATCHPROPS>& matches) {
MATCHPROPS tempMatch; MATCHPROPS tempMatch;
bool swapped; bool swapped;
if (matches.size() == 1) return; if (matches.size() <= 1) return;
swapped = false; swapped = true;
while (!swapped) { while (swapped) {
swapped = false; swapped = false;
for (int iMatch = 0; iMatch < matches.size() - 1; iMatch++) { for (int iMatch = 0; iMatch < matches.size() - 1; iMatch++) {
if (matches[iMatch].commonVol > matches[iMatch+1].commonVol) { if (matches[iMatch].dist > matches[iMatch+1].dist) {
tempMatch = matches[iMatch]; //if (matches[iMatch].commonVol < matches[iMatch+1].commonVol) {
tempMatch = matches[iMatch+1];
matches[iMatch+1] = matches[iMatch]; matches[iMatch+1] = matches[iMatch];
matches[iMatch] = tempMatch; matches[iMatch] = tempMatch;
swapped = true; swapped = true;