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working examples added

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P.M. Sutter 2015-02-18 21:02:21 -06:00
parent 024d01c8ca
commit 3be45cffb4
6 changed files with 556858 additions and 40 deletions
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47
pipeline/datasets/example_simulation.py
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@ -33,26 +33,26 @@ continueRun = False
startCatalogStage = 1
endCatalogStage = 3
# directory for the input simulation/observational particle files
catalogDir = os.getenv("HOME")+"/workspace/Voids/catalogs/mergertree1024/"
# directory for the input simulation files
catalogDir = os.getenv("PWD")+"/../examples/"
# void catalog output directory
voidOutputDir = os.getenv("HOME")+"/workspace/Voids/sim/"
voidOutputDir = os.getenv("PWD")+"/../examples/example_simulation/"
# output directory for log files
logDir = os.getenv("PWD")+"/../logs/sim/"
logDir = os.getenv("PWD")+"/../logs/example_simulation/"
# output directory for figures
figDir = os.getenv("PWD")+"/../figs/sim/"
figDir = os.getenv("PWD")+"/../figs/example_simulation/"
# where to place the pipeline scripts
scriptDir = os.getenv("PWD")+"/sim/"
scriptDir = os.getenv("PWD")+"/example_simulation/"
# don't change
dataType = "simulation"
# available formats for simulation: gadget, sdf, multidark
dataFormat = "sdf"
dataFormat = "multidark"
# units of position in Mpc/h
dataUnit = 1
@ -84,19 +84,19 @@ numSubvolumes = 1
# Particles
# common filename of particle files
particleFileBase = "mf_4s_1G_1k_NNNNN"
particleFileBase = "example_simulation_NNNN.dat"
# this flag will be replaced by values in fileNums list below
particleFileDummy = 'NNNNN'
particleFileDummy = 'NNNN'
# list of file numbers for the particle files
fileNums = ["1.000"]
fileNums = ["z0.0"]
# redshift of each file in the above fileNums list
redshifts = ["0.0"]
# list of desired subsamples - these are in unts of h Mpc^-3!
subSamples = [1.0, 0.5]
subSamples = [1.0]
# if True, do the subsampling in preparation (available for sdf and multidark)
doSubSamplingInPrep = False
@ -112,14 +112,17 @@ shiftSimZ = False
# Halos
# common filename of halo files, leave blank to ignore halos
haloFileBase = "mf_4s_1G_1k_bgc2_NNNNN.sdf"
haloFileBase = ""
#haloFileBase = "mf_4s_1G_1k_bgc2_NNNNN.sdf"
# this flag will be replaced by values in fileNums list above
haloFileDummy = 'NNNNN'
haloFileDummy = ''
#haloFileDummy = 'NNNNN'
# minimum halo mass cuts to apply for the halo catalog
# use "none" to get all halos
minHaloMasses = ["none", 1.2e13]
minHaloMasses = []
#minHaloMasses = ["none", 1.2e13]
# locations of data in the halo catalog
haloFileMCol = 6 # mass
@ -147,14 +150,14 @@ hubble = 0.6962 # h_0
# each of the HOD sets will be applied to each halo catalog defined above
hodParmList = [
{'name' : "LowRes", #BOSS: Manera et al. 2012, eq. 26
'Mmin' : 0.0,
'M1' : 1.e14,
'sigma_logM' : 0.596,
'alpha' : 1.0127,
'Mcut' : 1.19399e13,
'galDens' : 0.0002,
},
#{'name' : "LowRes", #BOSS: Manera et al. 2012, eq. 26
# 'Mmin' : 0.0,
# 'M1' : 1.e14,
# 'sigma_logM' : 0.596,
# 'alpha' : 1.0127,
# 'Mcut' : 1.19399e13,
# 'galDens' : 0.0002,
#},
]
# END CONFIGURATION