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working examples added

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P.M. Sutter 2015-02-18 21:02:21 -06:00
parent 024d01c8ca
commit 3be45cffb4
6 changed files with 556858 additions and 40 deletions
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33
pipeline/datasets/example_observation.py
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@ -33,21 +33,17 @@ continueRun = False
startCatalogStage = 1
endCatalogStage = 3
# a global name to give
#catalogName = "lcdm"
# directory for input data files
inputDataDir = os.getenv("HOME")+"/workspace/Voids/catalogs/nyuvagc/"
inputDataDir = os.getenv("PWD")+"/../examples/"
# void catalog output directory
workDir = os.getenv("HOME")+"/workspace/Voids/sdss_dr7LCDM/"
workDir = os.getenv("PWD")+"/../examples/example_observation/"
# output directory for log files
logDir = os.getenv("PWD")+"/../logs/sdss_dr7LCDM"
logDir = os.getenv("PWD")+"/../logs/example_observation/"
# output directory for figures
figDir = os.getenv("PWD")+"/../figs/sdss_dr7LCDM"
figDir = os.getenv("PWD")+"/../figs/example_observation/"
# you need to set these manually: point to ZOBOV and C_TOOLS in VIDE directory
ZOBOV_PATH = os.getenv("PWD")+"/../zobov/"
@ -68,38 +64,39 @@ dataSampleList = []
# define your volume-limited samples
newSample = Sample(
# path to galaxy file is inputDataDir+dataFile
dataFile = "filename.dat"
dataFile = "example_observation.dat",
# full name for this sample
fullName = "lss.dr72dim1.dat",
fullName = "example_observation",
# a convenient nickname
nickName = "dim1",
nickName = "exobs",
# don't change this
dataType = "observation",
# assume volume-limites?
# assume sample is volume-limited?
volumeLimited = True,
# HEALpix mask file
maskFile = inputDataDir+"/healpix/rast_window_512.fits",
maskFile = inputDataDir+"/example_observation_mask.fits",
# radial selection function (if not volume limited)
selFunFile = None,
# max and min redshifts of galaxies in your sample
zBoundary = (0.0, 0.05),
zBoundary = (0.0, 0.15),
# max and min redshifts where you want to find voids
zRange = (0.0, 0.05),
zRange = (0.1, 0.15),
# leave this at -1 for mean particle separation, or
# specify your own in Mpc/h
# leave this at -1 for mean particle separation,
# or specify your own in Mpc/h
minVoidRadius = -1,
# density of mock particles in cubic Mpc/h
fakeDensity = 0.01,
# (make this as high as you can afford)
fakeDensity = 0.05,
)
dataSampleList.append(newSample)