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bug fixes

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This commit is contained in:
P.M. Sutter 2014-05-09 12:01:59 -05:00
parent 4cf0ec1173
commit 39e16d41ff
6 changed files with 103 additions and 102 deletions
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69
python_tools/void_python_tools/voidUtil/matchUtil.py
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@ -32,7 +32,7 @@ def compareCatalogs(baseCatalogDir, compareCatalogDir,
outputDir="./", logDir="./",
matchMethod="useID", dataPortion="central",
strictMatch=True,
pathToCTools="../../../c_tools")
pathToCTools="../../../c_tools"):
# reports the overlap between two void catalogs
# baseCatalogDir: directory of catalog 1
@ -44,36 +44,37 @@ def compareCatalogs(baseCatalogDir, compareCatalogDir,
# strictMatch: if True, only attempt to match to trimmed catalog
# pathToCTools: path to location of VIDE c_tools directory
if not os.access(outputDir, os.F_OK):
os.makedirs(outputDir)
if not os.access(logDir, os.F_OK):
os.makedirs(logDir)
outFileName = outputDir + "/" + "voidOverlap" #+ ".dat"
with open(baseCatalogDir+"/sample_info.dat", 'rb') as input:
baseSample = pickle.load(input)
with open(compareCatalogDir+"/sample_info.dat", 'rb') as input:
sample = pickle.load(input)
print " Comparing", baseSample.fullName, "to", sample.fullName, "...",
sys.stdout.flush()
sampleName = sample.fullName
binPath = pathToCTools+"/analysis/voidOverlap"
logFile = logDir+"/compare_"+baseSample.fullName+"_"+sampleName+".out"
stepOutputFileName = outFileName + "_" + baseSample.fullName + "_" + \
sampleName + "_"
launchVoidOverlap(baseSample, sample, baseCatalogDir,
compareCatalogDir, binPath,
thisDataPortion=dataPortion, logFile=logFile,
continueRun=False, workDir=workDir,
outputFile=stepOutputFileName,
matchMethod=matchMethod,
strictMatch=strictMatch)
print " Done!"
if not os.access(outputDir, os.F_OK):
os.makedirs(outputDir)
if not os.access(logDir, os.F_OK):
os.makedirs(logDir)
outFileName = outputDir + "/" + "voidOverlap" #+ ".dat"
with open(baseCatalogDir+"/sample_info.dat", 'rb') as input:
baseSample = pickle.load(input)
with open(compareCatalogDir+"/sample_info.dat", 'rb') as input:
sample = pickle.load(input)
print " Comparing", baseSample.fullName, "to", sample.fullName, "...",
sys.stdout.flush()
sampleName = sample.fullName
binPath = pathToCTools+"/analysis/voidOverlap"
logFile = logDir+"/compare_"+baseSample.fullName+"_"+sampleName+".out"
stepOutputFileName = outFileName + "_" + baseSample.fullName + "_" + \
sampleName + "_"
launchVoidOverlap(baseSample, sample, baseCatalogDir,
compareCatalogDir, binPath,
thisDataPortion=dataPortion, logFile=logFile,
continueRun=False, workDir=workDir,
outputFile=stepOutputFileName,
matchMethod=matchMethod,
strictMatch=strictMatch)
print " Done!"
return