Moved jozov2 into its own directory. More code reorganization in voz1b1.

c_tools/zobov2/jozov2/jozov2.hpp

@@ -0,0 +1,47 @@
+#ifndef __JOZOV2_HPP
+#define __JOZOV2_HPP
+
+#include <string>
+#include <exception>
+#include "zobov.hpp"
+
+#define BIGFLT 1e30 /* Biggest possible floating-point number */
+#define NLINKS 1000 /* Number of possible links with the same rho_sl */
+#define FF cout.flush()
+
+class FileError: virtual std::exception
+{
+};
+
+void readAdjacencyFile(const std::string& adjfile, PARTICLE*& p, pid_t& np)
+  throw(FileError);
+
+void readVolumeFile(const std::string& volfile, PARTICLE *p, pid_t np, 
+                    pid_t mockIndex)
+  throw(FileError);
+
+void buildInitialZones(PARTICLE *p, pid_t np, pid_t* jumped, 
+                       pid_t *numinh, pid_t& numZones);
+
+void buildZoneAdjacencies(PARTICLE *p, pid_t np,
+                          ZONE *z, ZONET *zt,
+                          int numZones,
+                          pid_t *jumped,
+                          int *zonenum,
+                          int *numinh);
+
+void buildZones(PARTICLE *p, pid_t np, pid_t *&jumped,
+                ZONE*& z, int& nzones,
+                int*& zonenum);
+
+void doWatershed(PARTICLE *p, pid_t np, ZONE *z, int numZones, float maxvol, float voltol);
+
+void writeZoneFile(const std::string& zonfile, PARTICLE* p, pid_t np,
+                   ZONE *z, int numZones, int* zonenum, int *jumped);
+
+void writeVoidFile(const std::string& zonfile2, ZONE *z, int numZones);
+
+
+extern "C" void findrtop(double *a, int na, int *iord, int nb);
+
+#endif