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committing misc local edits before mergering with GPL'd versions

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This commit is contained in:
P.M. Sutter 2013-03-03 21:00:37 -06:00
parent af4f6cf41e
commit 29cb7a5a45
6 changed files with 33 additions and 17 deletions
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8
crossCompare/analysis/mergerTree.py
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@ -44,6 +44,7 @@ for (iSample, sampleDir) in enumerate(sampleDirList):
sample = pickle.load(input)
print " Working with", sample.fullName, "...",
sys.stdout.flush()
sampleName = sample.fullName
@ -53,11 +54,12 @@ for (iSample, sampleDir) in enumerate(sampleDirList):
sampleName + "_"
#stepOutputFileName = os.getcwd()+"/data/overlap_"
launchVoidOverlap(baseSample, sample, workDir+baseSampleDir,
workDir+sampleDir, binPath,
launchVoidOverlap(sample, baseSample, workDir+sampleDir,
workDir+baseSampleDir, binPath,
thisDataPortion="central", logFile=logFile,
continueRun=False, workDir=workDir,
outputFile=stepOutputFileName)
outputFile=stepOutputFileName,
matchMethod="proximity")
# attach columns to summary file
#if iSample == 1: