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added a-p analysis script to repo; some minor bug fixes to adjust tools to work with simulation data

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This commit is contained in:
P.M. Sutter 2012-11-02 08:19:23 -05:00
parent de6dbd3051
commit 21431f9a31
6 changed files with 41 additions and 1500 deletions
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1453
python_tools/void_python_tools/backend/backend.py
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60
python_tools/void_python_tools/backend/launchers.py
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@ -150,6 +150,9 @@ def launchGenerate(sample, binPath, workDir=None, inputDataDir=None,
else:
print "already done!"
if os.access("comoving_distance.txt", os.F_OK):
os.system("mv %s %s" % ("comoving_distance.txt", zobovDir))
if os.access(parmFile, os.F_OK):
os.unlink(parmFile)
@ -460,34 +463,37 @@ def launchStack(sample, stack, binPath, thisDataPortion=None, logDir=None,
return
# figure out box volume and average density
maskFile = sample.maskFile
sulFunFile = sample.selFunFile
if sample.dataType == "observation":
maskFile = sample.maskFile
sulFunFile = sample.selFunFile
if not os.access(sample.selFunFile, os.F_OK) and not volumeLimited:
print " Cannot find", selFunFile, "!"
exit(-1)
if not os.access(sample.selFunFile, os.F_OK) and not sample.volumeLimited:
print " Cannot find", selFunFile, "!"
exit(-1)
sys.stdout = open(logFile, 'a')
sys.stderr = open(logFile, 'a')
zMin = sample.zRange[0]
zMax = sample.zRange[1]
if not sample.volumeLimited:
props = vp.getSurveyProps(maskFile, stack.zMin,
stack.zMax, zMin, zMax, "all",
selectionFuncFile=sample.selFunFile)
sys.stdout = open(logFile, 'a')
sys.stderr = open(logFile, 'a')
zMin = sample.zRange[0]
zMax = sample.zRange[1]
if not sample.volumeLimited:
props = vp.getSurveyProps(maskFile, stack.zMin,
stack.zMax, zMin, zMax, "all",
selectionFuncFile=sample.selFunFile)
else:
zMinForVol = sample.zBoundary[0]
zMaxForVol = sample.zBoundary[1]
props = vp.getSurveyProps(maskFile, zMinForVol,
zMaxForVol, zMin, zMax, "all")
sys.stdout = sys.__stdout__
sys.stderr = sys.__stderr__
boxVol = props[0]
nbar = props[1]
if sample.volumeLimited:
nbar = 1.0
else:
zMinForVol = sample.zBoundary[0]
zMaxForVol = sample.zBoundary[1]
props = vp.getSurveyProps(maskFile, zMinForVol,
zMaxForVol, zMin, zMax, "all")
sys.stdout = sys.__stdout__
sys.stderr = sys.__stderr__
boxVol = props[0]
nbar = props[1]
if sample.volumeLimited:
nbar = 1.0
boxVol = sample.boxLen**3
summaryLine = runSuffix + " " + \
thisDataPortion + " " + \
@ -1173,7 +1179,11 @@ def launchHubble(dataPortions=None, dataSampleList=None, logDir=None,
voidDir = sample.zobovDir+"/stacks_" + runSuffix
centersFile = voidDir+"/centers.txt"
if os.access(centersFile, os.F_OK):
voidRedshifts = np.loadtxt(centersFile)[:,5]
voidRedshifts = np.loadtxt(centersFile)
if voidRedshifts.ndim > 1:
voidRedshifts = voidRedshifts[:,5]
else:
voidRedshifts = voidRedshifts[5]
#fp.write(str(len(voidRedshifts))+" ")
np.savetxt(fp, voidRedshifts[None])
else: