Supports minimum halo mass cuts. Start of scripts to generate masked mock sets, some files added to later support more general preparation scripts

pipeline/datasets/mock_dr9mid.py

@@ -0,0 +1,62 @@
+import os
+
+# -----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------
+# CONFIGURATION
+
+# directory for the input simulation/observational particle files
+catalogDir = os.getenv("HOME")+"/workspace/Voids/catalogs/mock_dr9mid/"
+
+# path to HOD code
+hodPath = os.getenv("HOME")+"/projects/Voids/hod/HOD.x"
+
+# path to mask
+maskFile = os.getenv("HOME")+"/workspace/Voids/catalogs/boss/final_boss_mask.fits")
+
+# where to put the final void catalog, figures, and output logs
+voidOutputDir = os.getenv("HOME")+"/workspace/Voids/mock_dr9mid/"
+figDir = os.getenv("PWD")+"/../figs/mock_dr9mid/"
+logDir = os.getenv("PWD")+"/../logs/mock_dr9mid/"
+
+# where to place the pipeline scripts
+scriptDir = os.getenv("PWD")+"/mock_dr9mid/"
+
+# simulation or observation?
+dataType = "observation"
+
+# available formats for simulation: gadget, multidark
+dataFormat = "multidark"
+dataUnit = 1 # as multiple of Mpc/h
+
+# place particles on the lightcone?
+useLightCone = True
+
+# list of file numbers for the particle files
+# to get particle file name, we take particleFileBase+fileNum
+fileNums = (("0.53"))
+
+# redshift range of the mock
+redshiftRange = (0.53, 0.6)
+
+# prefix to give all outputs
+prefix = "mock_"
+
+# common filename of halo files
+haloFileBase = "mdr1_halos_z"
+
+# adjust these two parameters given the memory contraints on your system:
+#   numZobovDivisions: how many sub-volumes per dimension will zobov process
+#   numZobovThreads: how many sub-volumes to process at once?   
+numZobovDivisions = 2
+numZobovThreads = 2
+
+# simulation information
+numPart = 1024*1024*1024
+lbox = 1000 # Mpc/h
+omegaM = 0.27
+hubble = 0.70
+
+
+# END CONFIGURATION
+# -----------------------------------------------------------------------------
+# -----------------------------------------------------------------------------

pipeline/datasets/multidark.py

@@ -52,6 +52,13 @@ prefix = "md_"
 #subSamples = [ 1.0 ]
 subSamples = ((0.1, 0.05, 0.01, 0.002, 0.001, 0.0004, 0.0002))
 
+# common filename of halo files
+haloFileBase = "mdr1_halos_z"
+
+# minimum halo mass cuts to apply for the halo catalog
+#   use "none" to get all halos
+minHaloMasses = (("none", 2e12, 1.23e13))
+
 # adjust these two parameters given the memory contraints on your system:
 #   numZobovDivisions: how many sub-volumes per dimension will zobov process
 #   numZobovThreads: how many sub-volumes to process at once?