Update website
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2
lib/.htaccess
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2
lib/.htaccess
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@ -0,0 +1,2 @@
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Order Deny, Allow
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Deny from all
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87
lib/auth.php
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87
lib/auth.php
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@ -0,0 +1,87 @@
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<?php
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require_once dirname(__FILE__)."/config/config.php";
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function check_auth() {
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global $oauth_id, $oauth_secret, $oauth_callback;
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if (isset($_SESSION['allowed_admin']) && $_SESSION['allowed_admin'] == true) {
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if (isset($_GET['logout']) && $_GET['logout'] == '1') {
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unset($_SESSION['allowed_admin']);
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}
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else if (isset($_SESSION['origin_url'])) {
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header('Location: '.$_SESSION['origin_url']);
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unset($_SESSION['origin_url']);
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exit;
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}
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else return;
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}
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$provider = new Stevenmaguire\OAuth2\Client\Provider\Bitbucket([
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'clientId' => $oauth_id,
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'clientSecret' => $oauth_secret,
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'redirectUri' => $oauth_callback
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]);
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if (!isset($_GET['code'])) {
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$_SESSION['origin_url'] = $_SERVER['REQUEST_URI'];
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if (isset($_GET['o'])) {
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$_SESSION['origin_url'] = urldecode($_GET['o']);
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}
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// If we don't have an authorization code then get one
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$authUrl = $provider->getAuthorizationUrl();
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$_SESSION['oauth2state'] = $provider->getState();
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header('Location: '.$authUrl);
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exit;
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// Check given state against previously stored one to mitigate CSRF attack
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} elseif (empty($_GET['state']) || ($_GET['state'] !== $_SESSION['oauth2state'])) {
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unset($_SESSION['oauth2state']);
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exit('Invalid state');
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} else {
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// Try to get an access token (using the authorization code grant)
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$token = $provider->getAccessToken('authorization_code', [
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'code' => $_GET['code']
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]);
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$_SESSION["web-key"] = $token;
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// Optional: Now you have a token you can look up a users profile data
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try {
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// We got an access token, let's now get the user's details
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$user = $provider->getResourceOwner($token);
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if ($user->getUsername() != "glavaux") {
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$_SESSION["allowed_admin"] = false;
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exit('Invalid user');
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}
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$_SESSION["allowed_admin"] = true;
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// Use these details to create a new profile
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// printf('Hello %s!', $user->getUsername());
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if (isset($_SESSION['origin_url']) && !empty($_SESSION['origin_url'])) {
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header('Location: '.$_SESSION['origin_url']);
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unset($_SESSION['origin_url']);
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exit;
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}
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} catch (Exception $e) {
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// Failed to get user details
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exit('Oh dear...');
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}
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// Use this to interact with an API on the users behalf
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// echo $token->getToken();
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}
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}
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check_auth();
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22
lib/config.php.sample
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22
lib/config.php.sample
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<?php
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//ini_set('display_errors','1');
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//error_reporting(E_ALL);
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$iap_debug = true;
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$iap_root = "http://localhost:8001/";
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$ADS_TOKEN = "";
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$connectionParams = array(
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'dbname' => 'mydb',
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'user' => 'user',
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'password' => 'secret',
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'host' => 'localhost',
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'driver' => 'pdo_mysql',
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);
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$oauth_id="";
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$oauth_secret="";
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$oauth_callback="";
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231
lib/schema.php
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231
lib/schema.php
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<?php
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require_once dirname(__FILE__).'/../vendor/autoload.php';
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use Doctrine\DBAL\Connection;
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use Doctrine\DBAL\Schema\Schema;
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use Doctrine\DBAL\Types\Types;
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class PersoSchema extends Schema
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{
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/**
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* @var Connection
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*/
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private $connection;
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private $options;
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private $sm;
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private $publiTable;
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private $publiHistory;
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private $currentTime;
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private $confirmMessage;
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/**
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* @param array $options the options could be use to make the table names configurable
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*/
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public function __construct(array $options = [], Connection $connection = null)
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{
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$this->connection = $connection;
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$schemaConfig = null === $connection ? null : $connection->getSchemaManager()->createSchemaConfig();
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parent::__construct([], [], $schemaConfig);
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$this->options = $options;
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$this->sm = $connection->getSchemaManager();
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$this->addPublications();
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$this->currentTime = new DateTimeImmutable();
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$this->addCitationHistory();
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$this->addConfirmMessage();
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}
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public function migrate()
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{
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$oldSchema = $this->sm->createSchema();
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$db_platform = $this->connection->getDatabasePlatform();
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foreach ($oldSchema->getMigrateToSql($this, $db_platform) as $sql) {
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$this->connection->executeStatement($sql);
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}
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return true;
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}
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public function addPublications()
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{
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$publiTable = $this->createTable('publications');
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$publiTable->addColumn('id', 'integer', ['unsigned' => true, 'customSchemaOptions' => ['unique' => true]]);
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$publiTable->addColumn('arxiv', 'string', ['length' => 20, 'notnull' => false]);
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$publiTable->addColumn('owned', 'boolean');
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$publiTable->addColumn('doi', 'string', ['length' => 100, 'notnull' => false]);
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$publiTable->addColumn('ads', 'string', ['length' => 100]);
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$publiTable->addColumn('ads_docid', 'integer', ['unsigned' => true]);
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$publiTable->addColumn('title', 'string', ['length' => 200]);
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$publiTable->addColumn('authors', Types::JSON);
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$publiTable->addColumn('citation_count', Types::INTEGER, ['unsigned' => true]);
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$publiTable->addColumn('year', Types::INTEGER, ['unsigned' => true]);
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$publiTable->addColumn('date', Types::DATETIME_IMMUTABLE);
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$publiTable->addColumn('journal', Types::STRING, ['notnull' => false, 'length' => 256]);
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$publiTable->addColumn('page', Types::STRING, ['notnull' => false, 'length' => 24]);
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$publiTable->addColumn('volume', Types::STRING, ['notnull' => false, 'length' => 24]);
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$publiTable->setPrimaryKey(['id']);
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// $schema->createSequence("publi_table_seq");
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}
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public function addConfirmMessage()
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{
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$confirmMessage = $this->createTable('confirm_message');
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$confirmMessage->addColumn('id', Types::INTEGER, ['unsigned' => true]);
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$confirmMessage->addColumn('token', Types::STRING, ['length' => 24, 'notnull' => true]);
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$confirmMessage->addColumn('sender_name', Types::STRING, ['length' => 80]);
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$confirmMessage->addColumn('sender_email', Types::STRING, ['length' => 80]);
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$confirmMessage->addColumn('body', Types::STRING, ['length' => 1000]);
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}
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public function addCitationHistory()
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{
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$publiHistory = $this->createTable('citation_history');
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$publiHistory->addColumn('id', Types::INTEGER, ['unsigned' => true]);
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$publiHistory->addColumn('date', Types::DATETIME_IMMUTABLE);
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$publiHistory->addColumn('citation_count', Types::INTEGER, ['unsigned' => true]);
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}
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public function insertPublication(array $doc, bool $update = false)
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{
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$data = [
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'id' => intval($doc['id']),
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'ads' => $doc['bibcode'],
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'title' => $doc['title'][0],
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'ads_docid' => intval($doc['id']),
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'authors' => $doc['author'],
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'citation_count' => intval($doc['citation_count']),
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'year' => intval($doc['year']),
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'date' => new DateTimeImmutable($doc['date']),
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'journal' => $doc['pub'] ?? null,
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'page' => $doc['page'][0] ?? null,
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'volume' => $doc['volume'] ?? null,
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];
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// echo "Inserting " . json_encode($doc);
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if (!array_key_exists('doi', $doc) || count($doc['doi']) == 0) {
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$doi = null;
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} else {
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$data['doi'] = $doc['doi'][0];
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}
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if (array_key_exists('identifier', $doc)) {
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foreach ($doc['identifier'] as $pubid) {
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if (str_starts_with($pubid, 'arXiv:')) {
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$data['arxiv'] = substr($pubid, 6);
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break;
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}
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}
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}
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$types = ['authors' => Types::JSON, 'date' => Types::DATETIME_IMMUTABLE];
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if ($update) {
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$this->connection->update(
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'publications',
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$data,
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['id' => $data['id']],
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$types
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);
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} else {
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$data['owned'] = true;
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$this->connection->insert(
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'publications',
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$data,
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$types
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);
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}
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}
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public function refreshHistory(array $doc)
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{
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$data = [
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'id' => intval($doc['id']),
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'date' => $this->currentTime,
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'citation_count' => intval($doc['citation_count']),
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];
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$types = ['date' => Types::DATETIME_IMMUTABLE];
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$this->connection->insert(
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'citation_history',
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$data,
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$types
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);
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}
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public function submitMessage(string $name, string $email, string $message)
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{
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$data = [
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'sender_name' => $name,
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'sender_email' => $email,
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'message' => $message,
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'token' => $mytoken,
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];
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$this->connection->insert(
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'confirm_message',
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$data
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);
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$mail = new PHPMailer(true);
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try {
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// Server settings
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$mail->isSMTP(); // Send using SMTP
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$mail->Host = 'smtp.iap.fr'; // Set the SMTP server to send through
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$mail->Port = 587; // TCP port to connect to; use 587 if you have set `SMTPSecure = PHPMailer::ENCRYPTION_STARTTLS`
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// Recipients
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$mail->setFrom('@iap.fr', 'Web Mailer');
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$mail->addAddress($email, 'submitter'); // Add a recipient
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// Content
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$mail->isHTML(false); // Set email format to HTML
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$mail->Subject = 'Guilhem website: confirm message';
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$mail->Body = $confirm_body;
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$mail->send();
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$result_summary = 'Successfully sent';
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$result = 'Message has been sent';
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} catch (Exception $e) {
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$result_summary = 'Error sending message';
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$result = "Message could not be sent. Mailer Error: {$mail->ErrorInfo}";
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}
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}
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public function confirmMessage(string $token)
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{
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// Create an instance; passing `true` enables exceptions
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$mail = new PHPMailer(true);
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$tpl = $m->loadTemplate('email_sent');
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try {
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// Server settings
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$mail->isSMTP(); // Send using SMTP
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$mail->Host = 'smtp.iap.fr'; // Set the SMTP server to send through
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$mail->Port = 587; // TCP port to connect to; use 587 if you have set `SMTPSecure = PHPMailer::ENCRYPTION_STARTTLS`
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// Recipients
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$mail->setFrom('guilhem.lavaux@iap.fr', 'Web Mailer');
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$mail->addAddress('guilhem.lavaux@iap.fr', 'Guilhem Lavaux'); // Add a recipient
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$mail->addReplyTo($email, $name);
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// Content
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$mail->isHTML(false); // Set email format to HTML
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$mail->Subject = 'Guilhem website: Message from '.$name;
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$mail->Body = $message;
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$mail->send();
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$result_summary = 'Successfully sent';
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$result = 'Message has been sent';
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} catch (Exception $e) {
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$result_summary = 'Error sending message';
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$result = "Message could not be sent. Mailer Error: {$mail->ErrorInfo}";
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}
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}
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}
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