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1d261c6251
cosmotool/external/external_build.cmake
Guilhem Lavaux 1d261c6251 Fix openmp support
2017-11-15 13:30:19 +01:00

348 lines
13 KiB
CMake
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include(FindOpenMP)
OPTION(ENABLE_OPENMP "Set to Yes if Healpix and/or you need openMP" OFF)
SET(FFTW_URL "http://www.fftw.org/fftw-3.3.3.tar.gz" CACHE URL "URL to download FFTW from")
SET(EIGEN_URL "http://bitbucket.org/eigen/eigen/get/3.2.10.tar.gz" CACHE URL "URL to download Eigen from")
SET(GENGETOPT_URL "ftp://ftp.gnu.org/gnu/gengetopt/gengetopt-2.22.5.tar.gz" CACHE STRING "URL to download gengetopt from")
SET(HDF5_URL "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.18/src/hdf5-1.8.18.tar.gz" CACHE STRING "URL to download HDF5 from")
SET(NETCDF_URL "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.tar.gz" CACHE STRING "URL to download NetCDF from")
SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz" CACHE STRING "URL to download NetCDF-C++ from")
SET(BOOST_URL "http://sourceforge.net/projects/boost/files/boost/1.61.0/boost_1_61_0.tar.gz/download" CACHE STRING "URL to download Boost from")
SET(GSL_URL "ftp://ftp.gnu.org/gnu/gsl/gsl-1.15.tar.gz" CACHE STRING "URL to download GSL from ")
mark_as_advanced(FFTW_URL EIGEN_URL HDF5_URL NETCDF_URL BOOST_URL GSL_URL)
MACRO(CHECK_CHANGE_STATE VAR)
IF (DEFINED _PREVIOUS_${VAR})
IF (NOT ${_PREVIOUS_${VAR}} EQUAL ${${VAR}})
foreach(loopvar ${ARGN})
UNSET(${loopvar} CACHE)
endforeach()
ENDIF (NOT ${_PREVIOUS_${VAR}} EQUAL ${${VAR}})
ENDIF (DEFINED _PREVIOUS_${VAR})
SET(_PREVIOUS_${VAR} ${${VAR}} CACHE INTERNAL "Internal value")
ENDMACRO(CHECK_CHANGE_STATE)
CHECK_CHANGE_STATE(INTERNAL_BOOST Boost_LIBRARIES Boost_INCLUDE_DIRS)
CHECK_CHANGE_STATE(INTERNAL_EIGEN EIGEN3_INCLUDE_DIRS)
CHECK_CHANGE_STATE(INTERNAL_GSL GSL_LIBRARY GSL_CBLAS_LIBRARY GSL_INCLUDE)
CHECK_CHANGE_STATE(INTERNAL_HDF5
HDF5_INCLUDE_DIR HDF5_LIBRARIES HDF5_CXX_LIBRARIES
HDF5_C_STATIC_LIBRARY HDF5_HL_STATIC_LIBRARY HDF5_CXX_STATIC_LIBRARY)
CHECK_CHANGE_STATE(INTERNAL_DLIB DLIB_INCLUDE_DIR DLIB_LIBRARIES)
IF(ENABLE_OPENMP)
IF (NOT OPENMP_FOUND)
MESSAGE(ERROR "No known compiler option for enabling OpenMP")
ENDIF(NOT OPENMP_FOUND)
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_C_FLAGS}")
ENDIF(ENABLE_OPENMP)
SET(BUILD_PREFIX ${CMAKE_BINARY_DIR}/external_build)
SET(EXT_INSTALL ${CMAKE_BINARY_DIR}/ext_install)
SET(CONFIGURE_LIBS )
SET(CONFIGURE_CPP_FLAGS "")
SET(CONFIGURE_LDFLAGS "")
if (ENABLE_SHARP)
SET(DEP_BUILD ${BUILD_PREFIX}/sharp-prefix/src/sharp/auto)
IF(NOT ENABLE_OPENMP)
SET(SHARP_OPENMP --disable-openmp)
ENDIF()
ExternalProject_Add(sharp
URL ${CMAKE_SOURCE_DIR}/external/libsharp-6077806.tar.gz
PREFIX ${BUILD_PREFIX}/sharp-prefix
BUILD_IN_SOURCE 1
CONFIGURE_COMMAND autoconf && ./configure "CC=${CMAKE_C_COMPILER}" "CXX=${CMAKE_CXX_COMPILER}" --prefix=${DEP_BUILD} ${SHARP_OPENMP}
BUILD_COMMAND ${CMAKE_MAKE_PROGRAM}
INSTALL_COMMAND echo "No install"
)
SET(CUTILS_LIBRARY ${DEP_BUILD}/lib/libc_utils.a)
SET(FFTPACK_LIBRARY ${DEP_BUILD}/lib/libfftpack.a)
SET(SHARP_LIBRARY ${DEP_BUILD}/lib/libsharp.a)
SET(SHARP_LIBRARIES ${SHARP_LIBRARY} ${FFTPACK_LIBRARY} ${CUTILS_LIBRARY})
SET(SHARP_INCLUDE_PATH ${DEP_BUILD}/include)
endif (ENABLE_SHARP)
###############
# Build HDF5
###############
if (INTERNAL_HDF5)
SET(HDF5_SOURCE_DIR ${BUILD_PREFIX}/hdf5-prefix/src/hdf5)
SET(HDF5_BIN_DIR ${EXT_INSTALL})
ExternalProject_Add(hdf5
PREFIX ${BUILD_PREFIX}/hdf5-prefix
URL ${HDF5_URL}
CMAKE_ARGS
-DCMAKE_INSTALL_PREFIX=${EXT_INSTALL}
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
-DHDF5_BUILD_CPP_LIB=ON
-DHDF5_BUILD_TOOLS=ON
-DHDF5_BUILD_HL_LIB=ON
-DBUILD_SHARED_LIBS=OFF
)
SET(cosmotool_DEPS ${cosmotool_DEPS} hdf5)
SET(hdf5_built hdf5)
SET(ENV{HDF5_ROOT} ${HDF5_BIN_DIR})
SET(HDF5_ROOTDIR ${HDF5_BIN_DIR})
SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${HDF5_BIN_DIR}/lib")
SET(CONFIGURE_LIBS "${CONFIGURE_LIBS} -ldl")
set(HDF5_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5.a CACHE STRING "HDF5 lib" FORCE)
set(HDF5_HL_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_hl.a CACHE STRING "HDF5 HL lib" FORCE)
set(HDF5_CXX_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_cpp.a CACHE STRING "HDF5 C++ lib" FORCE)
SET(HDF5_INCLUDE_DIRS ${HDF5_BIN_DIR}/include CACHE STRING "HDF5 include path" FORCE)
mark_as_advanced(HDF5_LIBRARIES HDF5_CXX_LIBRARIES HDF5_INCLUDE_DIRS)
MESSAGE(STATUS "Internal HDF5 directory: $ENV{HDF5_ROOT}")
MESSAGE(STATUS "Libs: ${HDF5_LIBRARIES}")
SET(HDF5_FOUND TRUE)
else (INTERNAL_HDF5)
mark_as_advanced(CLEAR HDF5_LIBRARIES HDF5_CXX_LIBRARIES HDF5_INCLUDE_DIRS)
if(HDF5_ROOTDIR)
SET(ENV{HDF5_ROOT} ${HDF5_ROOTDIR})
endif(HDF5_ROOTDIR)
find_package(HDF5 CONFIG QUIET COMPONENTS C CXX HL static)
if (NOT HDF5_FOUND)
cmessage(CWARNING "Could not find HDF5 cmake config. Try classical exploration")
find_package(HDF5 COMPONENTS C CXX HL)
cmessage(STATUS "HDF5 lib: ${HDF5_LIBRARIES}")
cmessage(STATUS "HDF5 includes: ${HDF5_INCLUDE_DIRS}")
cmessage(STATUS "HDF5 C lib: ${HDF5_C_LIBRARY}")
cmessage(STATUS "HDF5 BIN: ${HDF5_BIN_DIR}")
foreach(hdf5lib IN LISTS HDF5_LIBRARIES)
if (${hdf5lib} MATCHES "(hdf5)|(HDF5)")
get_filename_component(HDF5_BIN_DIR ${hdf5lib} DIRECTORY)
endif()
endforeach()
cmessage(STATUS "HDF5 libpath: ${HDF5_BIN_DIR}")
else()
cmessage(STATUS "Found HDF5 cmake config.")
cmessage(STATUS "HDF5_C_STATIC_LIBRARY : ${HDF5_C_STATIC_LIBRARY}")
set(HDF5_LIBRARIES ${HDF5_C_STATIC_LIBRARY} CACHE STRING "HDF5 lib" FORCE)
set(HDF5_HL_LIBRARIES ${HDF5_HL_STATIC_LIBRARY} CACHE STRING "HDF5 HL lib" FORCE)
set(HDF5_CXX_LIBRARIES ${HDF5_CXX_STATIC_LIBRARY} CACHE STRING "HDF5 C++ lib" FORCE)
get_filename_component(HDF5_BIN_DIR ${HDF5_C_STATIC_LIBRARY} DIRECTORY)
endif()
SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${HDF5_BIN_DIR}")
endif (INTERNAL_HDF5)
foreach(include_dir ${HDF5_INCLUDE_DIRS})
SET(CONFIGURE_CPP_FLAGS "${CONFIGURE_CPP_FLAGS} -I${include_dir}")
endforeach(include_dir)
###############
# Build NetCDF
###############
if (INTERNAL_NETCDF)
SET(NETCDF_SOURCE_DIR ${BUILD_PREFIX}/netcdf-prefix/src/netcdf)
SET(NETCDF_BIN_DIR ${EXT_INSTALL})
SET(CONFIGURE_CPP_FLAGS "${CONFIGURE_CPP_FLAGS} -I${NETCDF_BIN_DIR}/include")
SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${NETCDF_BIN_DIR}/lib")
SET(EXTRA_NC_FLAGS CPPFLAGS=${CONFIGURE_CPP_FLAGS} LIBS=${CONFIGURE_LIBS} LDFLAGS=${CONFIGURE_LDFLAGS})
SET(NETCDF_CONFIG_COMMAND ${NETCDF_SOURCE_DIR}/configure
--prefix=${NETCDF_BIN_DIR} --libdir=${NETCDF_BIN_DIR}/lib
--enable-netcdf-4 --with-pic --disable-shared --disable-dap
--disable-cdmremote --disable-rpc --enable-cxx-4
--disable-examples ${EXTRA_NC_FLAGS} CC=${CMAKE_C_COMPILER}
CXX=${CMAKE_CXX_COMPILER})
ExternalProject_Add(netcdf
DEPENDS ${hdf5_built}
PREFIX ${BUILD_PREFIX}/netcdf-prefix
URL ${NETCDF_URL}
CMAKE_ARGS
-DCMAKE_PREFIX_PATH=${EXT_INSTALL}
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
-DBUILD_SHARED_LIBS=OFF
-DBUILD_TESTING=OFF
-DCMAKE_BUILD_TYPE=Release
-DENABLE_NETCDF4=ON
-DENABLE_DAP=OFF
-DCMAKE_INSTALL_PREFIX=${NETCDF_BIN_DIR}
)
SET(NETCDFCXX_SOURCE_DIR ${BUILD_PREFIX}/netcdf-c++-prefix/src/netcdf-c++)
ExternalProject_Add(netcdf-c++
DEPENDS ${hdf5_built} netcdf
PREFIX ${BUILD_PREFIX}/netcdf-c++-prefix
URL ${NETCDFCXX_URL}
CMAKE_ARGS
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
-DBUILD_SHARED_LIBS=OFF
-DBUILD_TESTING=OFF
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_INSTALL_PREFIX=${NETCDF_BIN_DIR}
)
# SET(CONFIGURE_CPP_LDFLAGS "${CONFIGURE_LDFLAGS}")
# SET(EXTRA_NC_FLAGS CPPFLAGS=${CONFIGURE_CPP_FLAGS} LDFLAGS=${CONFIGURE_CPP_LDFLAGS})
SET(cosmotool_DEPS ${cosmotool_DEPS} netcdf netcdf-c++)
SET(NETCDF_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf.a CACHE STRING "NetCDF lib" FORCE)
SET(NETCDFCPP_LIBRARY ${NETCDF_BIN_DIR}/lib/libnetcdf-cxx4.a CACHE STRING "NetCDF-C++ lib" FORCE)
SET(NETCDF_INCLUDE_PATH ${NETCDF_BIN_DIR}/include CACHE STRING "NetCDF include" FORCE)
SET(NETCDFCPP_INCLUDE_PATH ${NETCDF_INCLUDE_PATH} CACHE STRING "NetCDF C++ include path" FORCE)
ELSE(INTERNAL_NETCDF)
find_path(NETCDF_INCLUDE_PATH NAMES netcdf.h)
find_path(NETCDFCPP_INCLUDE_PATH NAMES netcdfcpp.h netcdf)
find_library(NETCDF_LIBRARY netcdf)
find_library(NETCDFCPP_LIBRARY NAMES netcdf_c++ netcdf_c++4)
SET(CONFIGURE_CPP_FLAGS "${CONFIGURE_CPP_FLAGS} -I${NETCDF_INCLUDE_PATH} -I${NETCDFCPP_INCLUDE_PATH}")
endif (INTERNAL_NETCDF)
mark_as_advanced(NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH NETCDFCPP_INCLUDE_PATH)
##################
# Build BOOST
##################
if (INTERNAL_BOOST)
message(STATUS "Building Boost")
SET(BOOST_SOURCE_DIR ${BUILD_PREFIX}/boost-prefix/src/boost)
ExternalProject_Add(boost
URL ${BOOST_URL}
PREFIX ${BUILD_PREFIX}/boost-prefix
CONFIGURE_COMMAND
${BOOST_SOURCE_DIR}/bootstrap.sh --prefix=${CMAKE_BINARY_DIR}/ext_build/boost
BUILD_IN_SOURCE 1
BUILD_COMMAND ${BOOST_SOURCE_DIR}/b2 --with-exception
INSTALL_COMMAND echo "No install"
)
set(Boost_INCLUDE_DIRS ${BOOST_SOURCE_DIR} CACHE STRING "Boost path" FORCE)
set(Boost_LIBRARIES ${BOOST_SOURCE_DIR}/stage/lib/libboost_python.a CACHE STRING "Boost libraries" FORCE)
set(Boost_FOUND YES)
set(Boost_DEP boost)
ELSE (INTERNAL_BOOST)
find_package(Boost 1.53 QUIET)
set(Boost_DEP)
if (NOT Boost_FOUND)
cmessage(CWARNING "Boost >= 1.53 was not found")
endif()
endif (INTERNAL_BOOST)
mark_as_advanced(Boost_INCLUDE_DIRS Boost_LIBRARIES)
##################
# Build GSL
##################
IF(INTERNAL_GSL)
SET(GSL_SOURCE_DIR ${BUILD_PREFIX}/gsl-prefix/src/gsl)
ExternalProject_Add(gsl
URL ${GSL_URL}
PREFIX ${BUILD_PREFIX}/gsl-prefix
CONFIGURE_COMMAND ${GSL_SOURCE_DIR}/configure
--prefix=${EXT_INSTALL} --disable-shared
--with-pic
CPPFLAGS=${CONFIGURE_CPP_FLAGS} CC=${CMAKE_C_COMPILER} CXX=${CMAKE_CXX_COMPILER}
BUILD_IN_SOURCE 1
BUILD_COMMAND ${CMAKE_MAKE_PROGRAM}
INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
)
SET(GSL_INTERNAL_LIBS ${EXT_INSTALL}/lib)
SET(GSL_LIBRARY ${GSL_INTERNAL_LIBS}/libgsl.a CACHE STRING "GSL internal path" FORCE)
SET(GSLCBLAS_LIBRARY ${GSL_INTERNAL_LIBS}/libgslcblas.a CACHE STRING "GSL internal path" FORCE)
set(GSL_INCLUDE_PATH ${CMAKE_BINARY_DIR}/ext_build/gsl/include CACHE STRING "GSL internal path" FORCE)
SET(cosmotool_DEPS ${cosmotool_DEPS} gsl)
ELSE(INTERNAL_GSL)
find_path(GSL_INCLUDE_PATH NAMES gsl/gsl_blas.h)
find_library(GSL_LIBRARY gsl)
find_library(GSLCBLAS_LIBRARY gslcblas)
set(GSL_LIBRARIES ${GSL_LIBRARY} ${GSLCBLAS_LIBRARY})
ENDIF(INTERNAL_GSL)
mark_as_advanced(GSL_LIBRARY GSLCBLAS_LIBRARY GSL_INCLUDE_PATH)
#############
# Build FFTW
#############
IF(INTERNAL_FFTW)
SET(EXTRA_FFTW_CONF)
IF(HAVE_SSE)
SET(EXTRA_FFTW_CONF ${EXTRA_FFTW_CONF} --enable-sse)
ENDIF(HAVE_SSE)
IF(HAVE_SSE2)
SET(EXTRA_FFTW_CONF ${EXTRA_FFTW_CONF} --enable-sse2)
ENDIF(HAVE_SSE2)
IF(HAVE_AVX)
SET(EXTRA_FFTW_CONF ${EXTRA_FFTW_CONF} --enable-avx)
ENDIF(HAVE_AVX)
SET(cosmotool_DEPS ${cosmotool_DEPS} fftw)
SET(FFTW_SOURCE ${BUILD_PREFIX}/fftw-prefix/src/fftw)
ExternalProject_Add(fftw
URL ${FFTW_URL}
PREFIX ${BUILD_PREFIX}/fftw-prefix
CONFIGURE_COMMAND
${FFTW_SOURCE}/configure
--prefix=${EXT_INSTALL}
${EXTRA_FFTW_CONF} --disable-shared --enable-threads
BUILD_COMMAND ${CMAKE_MAKE_PROGRAM}
INSTALL_COMMAND ${CMAKE_MAKE_PROGRAM} install
)
SET(FFTW3_LIBRARY_DIRS ${EXT_INSTALL}/lib)
SET(FFTW3_INCLUDE_PATH ${EXT_INSTALL}/include)
SET(FFTW3_THREADS ${EXT_INSTALL}/lib/libfftw3_threads.a)
SET(FFTW3_LIBRARIES ${EXT_INSTALL}/lib/libfftw3.a)
ELSE (INTERNAL_FFTW)
pkg_check_modules(FFTW3 fftw3>=3.3)
pkg_check_modules(FFTW3F fftw3f>=3.3)
find_library(FFTW3F_LIBRARY_FULL fftw3f PATHS ${FFTW3F_LIBDIR} NO_DEFAULT_PATH)
find_library(FFTW3_LIBRARY_FULL fftw3 PATHS ${FFTW3_LIBDIR} NO_DEFAULT_PATH)
ENDIF(INTERNAL_FFTW)
##############
# Build Eigen
##############
IF (INTERNAL_EIGEN)
ExternalProject_Add(eigen
URL ${EIGEN_URL}
URL_HASH SHA256=04f8a4fa4afedaae721c1a1c756afeea20d3cdef0ce3293982cf1c518f178502
PREFIX ${BUILD_PREFIX}/eigen-prefix
CMAKE_ARGS -DCMAKE_INSTALL_PREFIX=${EXT_INSTALL}
-DCMAKE_C_COMPILER=${CMAKE_C_COMPILER}
-DCMAKE_CXX_COMPILER=${CMAKE_CXX_COMPILER}
)
SET(EIGEN3_INCLUDE_DIRS ${EXT_INSTALL}/include/eigen3)
ELSE (INTERNAL_EIGEN)
pkg_check_modules(EIGEN3 QUIET eigen3 )
if (NOT EIGEN3_FOUND)
cmessage(CWARNING "Eigen library not found")
endif()
ENDIF(INTERNAL_EIGEN)
SET(cosmotool_DEPS ${cosmotool_DEPS} omptl)
SET(OMPTL_BUILD_DIR ${BUILD_PREFIX}/omptl-prefix/src/omptl)
ExternalProject_Add(omptl
PREFIX ${BUILD_PREFIX}/omptl-prefix
URL ${CMAKE_SOURCE_DIR}/external/omptl-20120422.tar.bz2
CONFIGURE_COMMAND echo "No configure"
BUILD_COMMAND echo "No build"
PATCH_COMMAND patch -p1 -t -N < ${CMAKE_SOURCE_DIR}/external/patch-omptl
INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_directory ${OMPTL_BUILD_DIR} ${EXT_INSTALL}/include/omptl
)
include_directories(${EXT_INSTALL}/include)
##include_directories(${OMPTL_BUILD_DIR}/src/)
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