/*+ This is CosmoTool (./src/mykdtree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) guilhem.lavaux@gmail.com This software is a computer program whose purpose is to provide a toolbox for cosmological data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...) This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. +*/ #ifndef __HV_KDTREE_HPP #define __HV_KDTREE_HPP #include #include "config.hpp" #include "bqueue.hpp" namespace CosmoTool { template struct KDDef { typedef CType CoordType; typedef float KDCoordinates[N]; }; template struct KDCell { bool active; ValType val; typename KDDef::KDCoordinates coord; }; class NotEnoughCells: public Exception { public: NotEnoughCells() : Exception() {} ~NotEnoughCells() throw () {} }; class InvalidOnDiskKDTree : public Exception { public: InvalidOnDiskKDTree() : Exception() {} ~InvalidOnDiskKDTree() throw () {} }; template struct KDTreeNode { KDCell *value; KDTreeNode *children[2]; typename KDDef::KDCoordinates minBound, maxBound; #ifdef __KD_TREE_NUMNODES uint32_t numNodes; #endif }; template class RecursionInfoCells { public: typename KDDef::KDCoordinates x; typename KDDef::CoordType r, r2; KDCell **cells; typename KDDef::CoordType *distances; uint32_t currentRank; uint32_t numCells; }; template class RecursionMultipleInfo { public: const typename KDDef::KDCoordinates& x; BoundedQueue< KDCell *, typename KDDef::CoordType> queue; int traversed; RecursionMultipleInfo(const typename KDDef::KDCoordinates& rx, KDCell **cells, uint32_t numCells) : x(rx), queue(cells, numCells, INFINITY),traversed(0) { } }; template struct KD_default_cell_splitter { void operator()(KDCell **cells, uint32_t Ncells, uint32_t& split_index, int axis, typename KDDef::KDCoordinates minBound, typename KDDef::KDCoordinates maxBound); }; template > class KDTree { public: typedef typename KDDef::CoordType CoordType; typedef typename KDDef::KDCoordinates coords; typedef KDCell Cell; typedef KDTreeNode Node; CellSplitter splitter; KDTree(Cell *cells, uint32_t Ncells); ~KDTree(); uint32_t getIntersection(const coords& x, CoordType r, Cell **cells, uint32_t numCells) throw (NotEnoughCells); uint32_t getIntersection(const coords& x, CoordType r, Cell **cells, CoordType *distances, uint32_t numCells) throw (NotEnoughCells); uint32_t countCells(const coords& x, CoordType r); Cell *getNearestNeighbour(const coords& x); void getNearestNeighbours(const coords& x, uint32_t NumCells, Cell **cells); void getNearestNeighbours(const coords& x, uint32_t NumCells, Cell **cells, CoordType *distances); Node *getRoot() { return root; } void optimize(); Node *getAllNodes() { return nodes; } uint32_t getNumNodes() const { return lastNode; } uint32_t countActives() const; #ifdef __KD_TREE_NUMNODES uint32_t getNumberInNode(const Node *n) const { return n->numNodes; } #else uint32_t getNumberInNode(const Node *n) const { if (n == 0) return 0; return 1+getNumberInNode(n->children[0])+getNumberInNode(n->children[1]); } #endif #ifdef __KD_TREE_SAVE_ON_DISK KDTree(std::istream& i, Cell *cells, uint32_t Ncells) throw (InvalidOnDiskKDTree); void saveTree(std::ostream& o) const; #endif protected: Node *nodes; uint32_t numNodes; uint32_t lastNode; Node *root; Cell **sortingHelper; Cell *base_cell; bool periodic; Node *buildTree(Cell **cell0, uint32_t NumCells, uint32_t depth, coords minBound, coords maxBound); template void recursiveIntersectionCells(RecursionInfoCells& info, Node *node, int level) throw (NotEnoughCells); CoordType computeDistance(const Cell *cell, const coords& x) const; void recursiveNearest(Node *node, int level, const coords& x, CoordType& R2, Cell*& cell); void recursiveMultipleNearest(RecursionMultipleInfo& info, Node *node, int level); }; template uint32_t gatherActiveCells(KDCell **cells, uint32_t numCells); }; #include "mykdtree.tcc" #endif