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298 Commits

Author SHA1 Message Date
Guilhem Lavaux
bd310df1e3 Fixed incorrectly ordered parameters in prototype 2014-02-20 17:45:35 +01:00
Guilhem Lavaux
4737ee06a7 Removed 'critical' section as it may cause problem in calling function. The thread safety is left for the caller 2013-08-21 14:50:38 -04:00
Guilhem Lavaux
083cad3c77 Fix for NetCDF-4 ordering. Added new constructor to Fourier/Healpix to support weighted rings. 2013-07-17 12:11:55 +02:00
Guilhem Lavaux
cfae6184d5 Fixed initialization of realMap 2013-05-02 15:17:19 -04:00
Guilhem Lavaux
e2280a899f Moved plan creation into its subroutine 2013-05-02 15:04:25 -04:00
Guilhem Lavaux
0a412e0ec3 Merge branch 'master' of ssh://bitbucket.org/glavaux/cosmotool 2013-04-08 16:26:39 -04:00
Guilhem Lavaux
4f1a7f7c12 Added a critical barrier to fftw calls 2013-04-08 16:26:31 -04:00
Guilhem Lavaux
0f57cca2f5 Fixed missing explicit std namespace 2013-04-07 14:40:36 -04:00
Guilhem Lavaux
01f952865c Allow replication to be different along different dimensions 2013-03-07 09:45:52 -06:00
Guilhem Lavaux
766c86247a Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2013-03-07 09:39:59 -06:00
Guilhem Lavaux
b1ad29a99b Merge branch 'master' of file:///home/lavaux/Dropbox/gitRoot/CosmoToolbox 2013-03-07 09:39:14 -06:00
Guilhem Lavaux
1dcdde7bf5 Fixlet to gadget writer and use std::string instead of char * 2013-03-07 09:39:10 -06:00
Guilhem Lavaux
e0e6ea7be2 Run gather_sources.py 2013-03-05 22:39:33 -05:00
Guilhem Lavaux
50d830cb97 Updated correctly the authorship of the flash file reader to P. M. Sutter 2013-03-05 22:36:03 -05:00
Guilhem Lavaux
81ab45d228 Added new test for periodic KDTree 2013-03-05 22:32:11 -05:00
Guilhem Lavaux
54d23331f3 Added missing replication multiplicative factor 2013-03-05 11:11:20 -05:00
Guilhem Lavaux
a0bf3dc2c2 Activated support for periodic box search 2013-03-05 11:08:19 -05:00
Guilhem Lavaux
1b06786e63 Started work to support periodic boundaries in KDTree 2013-03-04 22:48:13 -05:00
Guilhem Lavaux
d724a7be66 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2013-03-02 18:43:05 -05:00
Guilhem Lavaux
e919bd4a73 Added Copyright/LICENSE disclaimer 2013-03-02 18:42:56 -05:00
Guilhem Lavaux
f1a30f3537 Use long instead of int for particle identifiers 2013-02-19 11:15:46 -05:00
Guilhem Lavaux
72df7b6c66 Fully implemented cosmopower 2012-12-13 17:27:46 -05:00
Guilhem Lavaux
052bc78e5f Added new class to isolate cosmology/powerspectra 2012-12-13 10:39:27 -05:00
Guilhem Lavaux
975156d1f3 Added the correction from Jennings (2012) for the velocity field 2012-12-12 17:41:14 -05:00
Guilhem Lavaux
a3ef55c318 Multiply the power spectrum by the volume to have proper units 2012-11-30 17:16:45 -05:00
Guilhem Lavaux
01f36b9be7 Added a get_delta_k function to get the element phase volume 2012-11-30 17:11:21 -05:00
Guilhem Lavaux
523cc8e44e Introduced another intermediate function for retrieving integer indexes 2012-11-28 22:33:42 -05:00
Guilhem Lavaux
7db82b3bb1 Fixed parameter types and return values 2012-11-28 18:57:23 -05:00
Guilhem Lavaux
3ef6475121 Added pixel -> kvec function 2012-11-28 17:54:21 -05:00
Guilhem Lavaux
bcf4ae2deb Added a specific function for computing \vec{k} 2012-11-28 17:49:58 -05:00
Guilhem Lavaux
5d6ad978e8 Fixed initialization of 3d FFT 2012-11-27 20:10:40 -05:00
Guilhem Lavaux
126ec18317 Cast the proper pair and enfore NetCDF4 file format if possible (even for NetCDF3 C++ interface) 2012-11-24 17:45:19 -05:00
Guilhem Lavaux
4c9b2ef96b Removed support for loadGadgetPosition. Added attribute support to SimuData. 2012-11-20 16:58:10 -05:00
Guilhem Lavaux
50142e3189 Changed programming interface of newSpectrumRaw 2012-11-20 08:45:48 -05:00
Guilhem Lavaux
bb20fcee05 Check healpix utility calls 2012-11-18 16:36:18 -05:00
Guilhem Lavaux
4c482daf9b Fixed dof interface. Implement utility class for healpix 2012-11-18 16:18:18 -05:00
Guilhem Lavaux
b7156fcc76 Splitted healpix.hpp into several files for easier maintainability 2012-11-18 15:47:37 -05:00
Guilhem Lavaux
f67b04e57e Splitted euclidian.hpp into several files. Added implementation of binned powerspectrum 2012-11-12 20:27:32 -05:00
Guilhem Lavaux
60c6d789e3 Added the copy and sqrt operator to SpectrumFunction 2012-11-12 10:02:22 -05:00
Guilhem Lavaux
7ad4911872 Changed interface of newRandomFourier to avoid generating copies. 2012-11-11 15:46:03 -05:00
Guilhem Lavaux
d8734b2a59 Fixed allocation and specification of dimensions to FFTW (must be swapped compared to CosmoTool convention) 2012-11-11 14:25:05 -05:00
Guilhem Lavaux
596dd5d681 Fixed use of constness in FourierMap::scale 2012-11-11 14:24:35 -05:00
Guilhem Lavaux
38eb21def8 Use size_t instead of int for alloc_* 2012-11-11 14:24:09 -05:00
Guilhem Lavaux
09551ae85b Fixed index computation in dot-product 2012-11-11 13:30:41 -05:00
Guilhem Lavaux
b161ab0990 Fixed dot-product in case the first dimension is odd 2012-11-11 09:10:30 -05:00
Guilhem Lavaux
3c0e7ae8f8 Fixed K computation. Handle fully the Nyquist plane depending on the parity of dimensions. 2012-11-10 19:11:34 -05:00
Guilhem Lavaux
cc7996175c Implemented power spectrum support in Euclidian/Healpix 2012-11-10 17:35:27 -05:00
Guilhem Lavaux
db6831e594 Merge branch 'master' of bitbucket.org:glavaux/cosmotool 2012-11-10 12:24:35 -05:00
Guilhem Lavaux
352c6b6eb6 Added a test for the healpix/sharp tranform. Basic code compiles and work. 2012-11-10 12:22:37 -05:00
Guilhem Lavaux
72f658c7cf Fixed fft_calls test and dimensions of fourier space 2012-11-10 10:56:47 -05:00
Guilhem Lavaux
414edbd28a Changed dependency to libsharp (MPI support, better performance). Added new power spectrum abstraction 2012-11-10 09:02:08 -05:00
Guilhem Lavaux
bddd26a5ca Fixed error message. Imported libsharp 2012-11-10 09:01:12 -05:00
Guilhem Lavaux
19c5e446aa Allow to disable simplices if they are strange 2012-10-30 13:58:46 -04:00
Guilhem Lavaux
828a1d7e86 Merge branch 'master' of /home/lavaux/Dropbox/gitRoot/CosmoToolbox 2012-10-25 13:51:58 -04:00
Guilhem Lavaux
0c0b04548b Return data directly if flags is zero 2012-10-25 13:51:54 -04:00
Guilhem Lavaux
843291ae53 Added healpix backend. Added default copy implementation 2012-10-07 14:58:01 -04:00
Guilhem Lavaux
5341c8ed5d Added general fourier/real transform (Nd euclidian, sphere to come...) 2012-10-06 12:49:06 -04:00
Guilhem Lavaux
b2bf2cb042 Fixed link ordering and detection of HL libraries 2012-09-20 01:59:46 -04:00
Guilhem Lavaux
c7d0974857 Missing updates... 2012-09-19 09:15:09 -04:00
Guilhem Lavaux
fe289507c5 Support both for NetCDF-3 and NetCDF-4 2012-09-19 09:11:06 -04:00
Guilhem Lavaux
7b5b1d5002 Fixed conflict 2012-09-17 17:24:27 -04:00
Guilhem Lavaux
63223a661f Added basic BSP test 2012-09-17 17:24:04 -04:00
Guilhem Lavaux
26a2e15cbe Added support for netcdf c++ 4.2 2012-09-15 18:53:47 -04:00
Guilhem Lavaux
0afe7b7eab Fixed build for handling only static lib 2012-09-12 21:30:20 -04:00
Guilhem Lavaux
dc03871f37 Upgraded ramses format-on-disk. DInterpolate assertion check 2012-06-28 09:36:28 -04:00
Guilhem Lavaux
17f3f74dd2 Merge branch 'master' of /home/lavaux/Dropbox/gitRoot/CosmoToolbox 2012-06-26 15:40:24 -04:00
Guilhem Lavaux
83753a9479 Updated for newer ramses 2012-06-26 15:40:19 -04:00
Guilhem Lavaux
0bbc9fe5eb Preliminary simple BSP tree, without automatic retriangulation 2012-06-10 19:04:00 -04:00
Guilhem Lavaux
134f4413eb Use the homogeneous splitter for interpolation 2012-06-08 09:49:22 -04:00
Your Name
ada4626131 Added support for negative powers in algo 2012-06-05 16:41:55 -04:00
Guilhem Lavaux
c1f1cf5a38 Merge branch 'master' of /home/lavaux/Dropbox/gitRoot/CosmoToolbox 2012-06-04 22:21:14 -04:00
Guilhem Lavaux
c5464dce31 Added some more methods to Interpolate (constness of compute and getYi) 2012-06-04 22:21:06 -04:00
Guilhem Lavaux
530c6f4fcd Few clever algorithms for fast power x^N 2012-05-21 19:11:14 -04:00
Guilhem Lavaux
604b19ce74 Fixed memory pool code 2012-05-21 14:19:36 -04:00
Guilhem Lavaux
80951b4b52 Fixed KDTree recursion and splitting technique 2012-05-21 14:04:21 -04:00
Guilhem Lavaux
d4a14d7d85 Merge branch 'master' of /home/guilhem/Dropbox/gitRoot/CosmoToolbox 2012-05-20 09:22:54 -04:00
Guilhem Lavaux
1ec0ac8d63 Added missing splitter 2012-05-20 09:22:51 -04:00
Guilhem Lavaux
b861dfe49a Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2012-05-20 09:22:05 -04:00
Guilhem Lavaux
f56cbf7cc5 Added an incomplete implementation of a memory iterator 2012-05-20 09:22:02 -04:00
Guilhem Lavaux
5fa5a73104 Added more modularity in the way the KD tree is built 2012-05-20 09:21:00 -04:00
Guilhem Lavaux
e8d1edf453 Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2012-05-18 18:16:42 -04:00
Guilhem Lavaux
59de27a696 New MemoryPool tool 2012-05-18 18:16:13 -04:00
Your Name
6d410dc129 Use std::string instead of C string in exception handling and yorick I/O 2012-05-03 11:45:38 -04:00
Guilhem Lavaux
7bd2ccbee4 Fixed bug in checking the maximum X value 2012-04-25 22:29:17 -04:00
Guilhem Lavaux
6035eaec4d Fixed gadget file writing. 2012-04-01 17:49:19 -05:00
Guilhem Lavaux
dae52ab257 Merge branch 'master' of /home/lavaux/Dropbox/gitRoot/CosmoToolbox 2012-03-30 11:47:51 -04:00
Guilhem Lavaux
d17fbbb66d Added support for writing gadget files 2012-03-30 11:47:48 -04:00
Your Name
2932240daf Merged 2012-03-29 15:55:08 -04:00
Your Name
6efe49a1ef Machine precision detection 2012-03-29 15:54:34 -04:00
Guilhem Lavaux
dc8ef0be34 Flash fixes 2011-12-15 12:12:10 -05:00
Guilhem Lavaux
196e17c242 Fixed decomposition. Add sample matrix. 2011-12-14 17:40:10 -05:00
Guilhem Lavaux
cf279bbb19 Added missing file 2011-12-13 22:43:53 -05:00
Your Name
8d4419d2fd Got a compiling version of the algorithm 2011-12-13 17:48:37 -05:00
Your Name
8dd58836e0 Finished draft implementation. 2011-12-13 17:23:50 -05:00
Your Name
75515949dc Incomplete implementatiof Eskow algorithm 2011-12-13 17:03:14 -05:00
Guilhem Lavaux
607f452f7c Fixed linking problems to GSL 2011-12-03 10:00:38 -05:00
Guilhem Lavaux
f94e2912d4 Added dummy function in case HDF5 is not found 2011-06-28 09:08:14 -04:00
Guilhem Lavaux
0eb308f1d0 Added dummy function in case HDF5 is not found 2011-06-28 09:08:12 -04:00
Guilhem Lavaux
1ae7233139 Have a recursion that only count particles 2011-06-22 13:57:06 -05:00
Guilhem Lavaux
97dbc381e0 Unit fix 2011-06-06 10:39:17 -05:00
Guilhem Lavaux
2f50155648 Fixed index ordering 2011-06-06 10:27:21 -05:00
Guilhem Lavaux
e96264e82c Fixed loop on particles 2011-06-06 11:23:29 -04:00
Guilhem Lavaux
6e72a5661a Fixed position&velocity computation 2011-06-06 11:22:39 -04:00
Guilhem Lavaux
0fbf6789f1 Use redshift for computing the scale factor 2011-06-06 11:20:03 -04:00
Guilhem Lavaux
1135be3bab Use correct table 2011-06-06 11:03:25 -04:00
Guilhem Lavaux
89a87303f1 Use proper conversion to Mpc/h 2011-06-06 11:00:03 -04:00
Guilhem Lavaux
b5b44fdead More cosmological parameters 2011-06-06 10:58:55 -04:00
Guilhem Lavaux
42c6f11034 Initialize TotalNumPart 2011-06-06 10:43:11 -04:00
Guilhem Lavaux
ed2d0c7841 Fixed exceptionhandling 2011-06-06 10:18:25 -04:00
Guilhem Lavaux
2fd8d06e36 Imported FLASH I/O functionality 2011-06-06 09:56:54 -04:00
Guilhem Lavaux
46a8ca36ae Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2011-06-06 09:43:40 -04:00
Guilhem Lavaux
a16945bc6b Updated test 2011-06-06 09:43:38 -04:00
Your Name
474f791e97 Merge branch 'master' of /home/guilhem/Dropbox/gitRoot/CosmoToolbox 2011-05-31 10:08:55 -04:00
Your Name
9665bb9c6a Get GIT revision 2011-05-31 10:08:44 -04:00
Guilhem Lavaux
247fc4db6b Fixed to correctly support velocities in gadget. Fixed on-disk format on kdtree 2011-03-17 13:39:20 -05:00
Your Name
f04e7dd41b New functions to save the built KDTree on disk 2011-02-24 18:04:42 -05:00
Your Name
707eaefbe1 Support more parameters in simulation 2011-02-22 14:36:17 -05:00
Your Name
4c08fdc90d Added a testcase for newton's method 2011-02-10 22:07:24 -05:00
Your Name
5b3bef64b1 Added a functor to interface with newton 2011-02-09 14:32:01 -05:00
Your Name
bf1e581ce9 Added newton's method 2011-02-09 14:31:45 -05:00
Your Name
e5b0be92af Merge branch 'master' of /home/guilhem/Dropbox/gitRoot/CosmoToolbox 2011-02-09 14:17:43 -05:00
Guilhem Lavaux
ff1819d853 Fixed CMake 2011-01-24 10:15:28 -05:00
Guilhem Lavaux
872dea5a3e Fixed log interpolation 2011-01-18 06:56:19 -06:00
Your Name
f4aac855a2 Fix for interpolation class. KDTree leaf counting fix. 2011-01-15 16:01:50 +01:00
Guilhem Lavaux
e3ac7d9720 Small fixes 2010-12-05 21:55:12 -05:00
Guilhem Lavaux
2b7e4453dd Compute the linear growth factor 2010-12-01 18:09:14 -05:00
Guilhem Lavaux
1d7ecf051c Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2010-12-01 10:04:20 -05:00
Guilhem Lavaux
06fa340de7 Implemented standard linear growth factor computation 2010-12-01 10:04:04 -05:00
Guilhem Lavaux
36cd54193f Added flexibility to the adaptive filter 2010-10-22 16:14:10 -04:00
Guilhem Lavaux
e9a9d64924 Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2010-09-22 21:26:07 -04:00
Guilhem Lavaux
51c5e5dcb2 Better ramses loading 2010-09-22 15:33:06 -05:00
Guilhem Lavaux
5571202c2f Merge branch 'master' of file:///home/lavaux/Dropbox/gitRoot/CosmoToolbox 2010-09-15 14:00:47 -05:00
Guilhem Lavaux
85d3428cb0 Removed nonexisting file 2010-09-15 14:00:10 -05:00
Guilhem Lavaux
82666a0606 Updated CMake lists 2010-09-15 20:51:18 +02:00
Guilhem Lavaux
79ac022e34 Packaging 2010-09-12 21:22:20 +02:00
Guilhem Lavaux
f9bb9c64c5 Transformed to CMake makefile 2010-09-12 21:09:39 +02:00
Guilhem Lavaux
883d1170e2 Fixed use of pow 2010-09-12 10:33:51 +02:00
Guilhem Lavaux
5e01e4af59 Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2010-08-26 15:35:18 -04:00
Guilhem Lavaux
779aa58900 U 2010-08-03 10:24:40 -05:00
Guilhem Lavaux
d9eb97525d Merge branch 'master' of file:///home/guilhem/Dropbox/gitRoot/CosmoToolbox 2010-06-29 17:54:20 -04:00
Guilhem Lavaux
91439c8cb5 Removed conflicted comments 2010-05-04 07:44:11 -05:00
Guilhem Lavaux
d0363d131e Fixed merge 2010-05-04 07:41:42 -05:00
Guilhem Lavaux
a9f9338849 Merge branch 'master' of file:///home/lavaux/Dropbox/gitRoot/CosmoToolbox 2010-04-27 07:16:34 -05:00
Guilhem Lavaux
37b41b5ac9 More fields + handling of multiple files in Gadget 2010-04-27 14:08:46 +02:00
Guilhem Lavaux
defa67cc9b Merge branch 'master' of file:///home/lavaux/Dropbox/gitRoot/CosmoToolbox 2010-04-27 06:47:32 -05:00
Guilhem Lavaux
063454ce2b Merge branch 'master' of file:///home/lavaux/Dropbox/gitRoot/CosmoToolbox 2010-04-27 06:45:20 -05:00
Guilhem Lavaux
36f4ddc51c Fixed boxsize initialization 2010-04-27 06:45:15 -05:00
Guilhem Lavaux
e4172f0cea New class to automatically cleanup arrays 2010-04-27 13:41:41 +02:00
Guilhem Lavaux
f142d87b93 New function to load gadget in any possible way 2010-04-27 13:38:00 +02:00
Guilhem Lavaux
cc6fcc8565 Add a function to lookup the sampled x coordinates 2010-04-27 13:36:17 +02:00