Allow to opt-out from yorick classes
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@ -20,6 +20,7 @@ option(INTERNAL_HDF5 "Build internal version of HDF5" OFF)
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option(INTERNAL_NETCDF "Build internal version of NETCDF" OFF)
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option(INTERNAL_NETCDF "Build internal version of NETCDF" OFF)
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option(INTERNAL_BOOST "Build internal version of BOOST" OFF)
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option(INTERNAL_BOOST "Build internal version of BOOST" OFF)
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option(USE_GIT_VERSION "Use GIT version to pad version number" OFF)
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option(USE_GIT_VERSION "Use GIT version to pad version number" OFF)
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option(YORICK_SUPPORT "Add for pleasant yorick support" ON)
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IF(USE_GIT_VERSION)
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IF(USE_GIT_VERSION)
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get_git_head_revision(HEAD GIT_VER)
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get_git_head_revision(HEAD GIT_VER)
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SET(EXTRA_VERSION "-${GIT_VER}")
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SET(EXTRA_VERSION "-${GIT_VER}")
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@ -36,13 +37,15 @@ MESSAGE(STATUS "Using the target ${CosmoTool_local} to build python module")
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include(${CMAKE_SOURCE_DIR}/external/external_build.cmake)
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include(${CMAKE_SOURCE_DIR}/external/external_build.cmake)
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IF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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IF(YORICK_SUPPORT)
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SET(FOUND_NETCDF4 1)
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IF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#define NETCDFCPP4 1")
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SET(FOUND_NETCDF4 1)
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ELSE(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#define NETCDFCPP4 1")
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SET(FOUND_NETCDF3 1)
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ELSE(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#undef NETCDFCPP4")
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SET(FOUND_NETCDF3 1)
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ENDIF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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FILE(WRITE ${CMAKE_BINARY_DIR}/src/ctool_netcdf_ver.hpp "#undef NETCDFCPP4")
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ENDIF(EXISTS ${NETCDFCPP_INCLUDE_PATH}/netcdf AND ${NETCDFCPP_LIBRARY} MATCHES "netcdf_c\\+\\+4")
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ENDIF(YORICK_SUPPORT)
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find_program(CYTHON cython)
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find_program(CYTHON cython)
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@ -52,7 +55,7 @@ endif(HDF5_ROOTDIR)
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find_package(HDF5 COMPONENTS HL CXX)
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find_package(HDF5 COMPONENTS HL CXX)
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set(NETCDF_FIND_REQUIRED TRUE)
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set(NETCDF_FIND_REQUIRED ${YORICK_SUPPORT})
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set(GSL_FIND_REQUIRED TRUE)
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set(GSL_FIND_REQUIRED TRUE)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(NetCDF DEFAULT_MSG NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(NetCDF DEFAULT_MSG NETCDF_LIBRARY NETCDFCPP_LIBRARY NETCDF_INCLUDE_PATH)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(GSL DEFAULT_MSG GSL_LIBRARY GSLCBLAS_LIBRARY GSL_INCLUDE_PATH)
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FIND_PACKAGE_HANDLE_STANDARD_ARGS(GSL DEFAULT_MSG GSL_LIBRARY GSLCBLAS_LIBRARY GSL_INCLUDE_PATH)
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@ -1,7 +1,9 @@
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SET(tolink ${GSL_LIBRARIES} ${CosmoTool_local} ${CosmoTool_LIBS})
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SET(tolink ${GSL_LIBRARIES} ${CosmoTool_local} ${CosmoTool_LIBS})
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include_directories(${CMAKE_SOURCE_DIR}/src)
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include_directories(${CMAKE_SOURCE_DIR}/src)
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include_directories(${FFTW3_INCLUDE_DIRS}
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include_directories(${FFTW3_INCLUDE_DIRS} ${EIGEN3_INCLUDE_DIRS} ${GSL_INCLUDE_PATH})
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${EIGEN3_INCLUDE_DIRS} ${NETCDF_INCLUDE_PATH} ${GSL_INCLUDE_PATH})
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if(YORICK_SUPPORT)
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include_directories(${NETCDF_INCLUDE_PATH})
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endif(YORICK_SUPPORT)
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include_directories(${CMAKE_SOURCE_DIR}/sample)
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include_directories(${CMAKE_SOURCE_DIR}/sample)
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IF(SHARP_INCLUDE_PATH)
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IF(SHARP_INCLUDE_PATH)
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@ -63,8 +65,10 @@ if (FFTW3_FOUND AND FFTW3F_FOUND AND EIGEN3_FOUND)
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IF (FFTW3_LIBRARY_FULL)
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IF (FFTW3_LIBRARY_FULL)
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SET(FFTW3_LIB ${FFTW3_LIB} ${FFTW3_LIBRARY_FULL})
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SET(FFTW3_LIB ${FFTW3_LIB} ${FFTW3_LIBRARY_FULL})
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ENDIF (FFTW3_LIBRARY_FULL)
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ENDIF (FFTW3_LIBRARY_FULL)
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add_executable(test_fft_calls test_fft_calls.cpp)
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IF(YORICK_SUPPORT)
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target_link_libraries(test_fft_calls ${tolink} ${FFTW3_LIB})
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add_executable(test_fft_calls test_fft_calls.cpp)
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target_link_libraries(test_fft_calls ${tolink} ${FFTW3_LIB})
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ENDIF(YORICK_SUPPORT)
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endif (FFTW3_FOUND AND FFTW3F_FOUND AND EIGEN3_FOUND)
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endif (FFTW3_FOUND AND FFTW3F_FOUND AND EIGEN3_FOUND)
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if (ENABLE_SHARP AND SHARP_LIBRARY AND SHARP_INCLUDE_PATH AND EIGEN3_FOUND)
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if (ENABLE_SHARP AND SHARP_LIBRARY AND SHARP_INCLUDE_PATH AND EIGEN3_FOUND)
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@ -81,15 +85,17 @@ target_link_libraries(test_cosmopower ${tolink})
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if (Boost_FOUND)
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if (Boost_FOUND)
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include_directories(${Boost_INCLUDE_DIRS})
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include_directories(${Boost_INCLUDE_DIRS})
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add_executable(testSmooth testSmooth.cpp)
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IF (YORICK_SUPPORT)
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target_link_libraries(testSmooth ${tolink})
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add_executable(testSmooth testSmooth.cpp)
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target_link_libraries(testSmooth ${tolink})
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add_executable(simple3DFilter simple3DFilter.cpp)
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add_executable(simple3DFilter simple3DFilter.cpp)
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target_link_libraries(simple3DFilter ${tolink})
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target_link_libraries(simple3DFilter ${tolink})
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ENDIF (YORICK_SUPPORT)
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endif (Boost_FOUND)
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endif (Boost_FOUND)
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IF (ENABLE_OPENMP)
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IF (ENABLE_OPENMP AND YORICK_SUPPORT)
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add_executable(gadgetToDensity gadgetToDensity.cpp)
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add_executable(gadgetToDensity gadgetToDensity.cpp)
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target_link_libraries(gadgetToDensity ${tolink})
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target_link_libraries(gadgetToDensity ${tolink})
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ENDIF (ENABLE_OPENMP)
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ENDIF (ENABLE_OPENMP AND YORICK_SUPPORT)
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@ -15,13 +15,15 @@ SET(CosmoTool_SRCS
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IF (ENABLE_OPENMP)
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IF (ENABLE_OPENMP)
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ENDIF (ENABLE_OPENMP)
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ENDIF (ENABLE_OPENMP)
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IF(FOUND_NETCDF3)
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IF (YORICK_SUPPORT)
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IF(FOUND_NETCDF3)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc3.cpp)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc3.cpp)
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ELSE(FOUND_NETCDF3)
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ELSE(FOUND_NETCDF3)
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IF(FOUND_NETCDF4)
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IF(FOUND_NETCDF4)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc4.cpp)
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SET(CosmoTool_SRCS ${CosmoTool_SRCS} yorick_nc4.cpp)
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ENDIF(FOUND_NETCDF4)
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ENDIF(FOUND_NETCDF4)
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ENDIF(FOUND_NETCDF3)
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ENDIF(FOUND_NETCDF3)
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ENDIF(YORICK_SUPPORT)
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if (HDF5_FOUND)
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if (HDF5_FOUND)
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@ -59,9 +61,13 @@ SET(CosmoTool_SRCS ${CosmoTool_SRCS}
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growthFactor.hpp
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growthFactor.hpp
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)
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)
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include_directories(${GSL_INCLUDE_PATH} ${NETCDF_INCLUDE_PATH} ${NETCDFCPP_INCLUDE_PATH} ${CMAKE_BINARY_DIR}/src)
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include_directories(${GSL_INCLUDE_PATH} ${CMAKE_BINARY_DIR}/src)
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set(CosmoTool_LIBS ${NETCDFCPP_LIBRARY} ${NETCDF_LIBRARY} ${GSL_LIBRARIES})
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set(CosmoTool_LIBS ${GSL_LIBRARIES})
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if(YORICK_SUPPORT)
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set(CosmoTool_LIBS ${CosmoTool_LIBS} ${NETCDFCPP_LIBRARY} ${NETCDF_LIBRARY} ${GSL_LIBRARIES})
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include_directories(${NETCDF_INCLUDE_PATH} ${NETCDFCPP_INCLUDE_PATH})
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endif(YORICK_SUPPORT)
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if (HDF5_FOUND)
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if (HDF5_FOUND)
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set(CosmoTool_LIBS ${CosmoTool_LIBS} ${HDF5_CXX_LIBRARIES} ${HDF5_LIBRARIES})
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set(CosmoTool_LIBS ${CosmoTool_LIBS} ${HDF5_CXX_LIBRARIES} ${HDF5_LIBRARIES})
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include_directories(${HDF5_INCLUDE_DIRS})
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include_directories(${HDF5_INCLUDE_DIRS})
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