Flash fixes
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196e17c242
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@ -179,13 +179,13 @@ void h5_read_flash3_particles (H5File* file,
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int* totalparticles,
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int* totalparticles,
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int* localnp,
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int* localnp,
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int* particle_offset,
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int* particle_offset,
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float pos1[],
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float *pos1,
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float pos2[],
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float *pos2,
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float pos3[],
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float *pos3,
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float vel1[],
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float *vel1,
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float vel2[],
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float *vel2,
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float vel3[],
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float *vel3,
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int id[])
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int *id)
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{
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{
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herr_t status;
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herr_t status;
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@ -339,15 +339,27 @@ void h5_read_flash3_particles (H5File* file,
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/* convert buffer into particle struct */
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/* convert buffer into particle struct */
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if (id) {
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for(p=0; p < (pcount); p++) {
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for(p=0; p < (pcount); p++) {
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id[p+poffset] = (int) *(partBuffer+iptag-1+p*numProps);
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id[p+poffset] = (int) *(partBuffer+iptag-1+p*numProps);
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} }
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if (pos1 && pos2 && pos3) {
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for(p=0; p < (pcount); p++) {
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pos1[p+poffset] = (float) *(partBuffer+ipx-1+p*numProps);
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pos1[p+poffset] = (float) *(partBuffer+ipx-1+p*numProps);
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pos2[p+poffset] = (float) *(partBuffer+ipy-1+p*numProps);
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pos2[p+poffset] = (float) *(partBuffer+ipy-1+p*numProps);
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pos3[p+poffset] = (float) *(partBuffer+ipz-1+p*numProps);
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pos3[p+poffset] = (float) *(partBuffer+ipz-1+p*numProps);
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}
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}
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if (vel1 && vel2 && vel3) {
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for(p=0; p < (pcount); p++) {
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vel1[p+poffset] = (float) *(partBuffer+ipvx-1+p*numProps);
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vel1[p+poffset] = (float) *(partBuffer+ipvx-1+p*numProps);
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vel2[p+poffset] = (float) *(partBuffer+ipvy-1+p*numProps);
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vel2[p+poffset] = (float) *(partBuffer+ipvy-1+p*numProps);
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vel3[p+poffset] = (float) *(partBuffer+ipvz-1+p*numProps);
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vel3[p+poffset] = (float) *(partBuffer+ipvz-1+p*numProps);
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}
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}
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}
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memspace.close();
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memspace.close();
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//status = H5Sclose(memspace);
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//status = H5Sclose(memspace);
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@ -23,13 +23,13 @@ void h5_read_flash3_particles (H5File* file,
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int* totalparticles,
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int* totalparticles,
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int* localnp,
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int* localnp,
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int* particle_offset,
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int* particle_offset,
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float pos1[],
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float *pos1,
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float pos2[],
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float *pos2,
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float pos3[],
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float *pos3,
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float vel1[],
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float *vel1,
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float vel2[],
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float *vel2,
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float vel3[],
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float *vel3,
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int id[]);
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int *id);
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void h5_read_flash3_header_info(H5File* file,
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void h5_read_flash3_header_info(H5File* file,
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double* time, /* simulation time */
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double* time, /* simulation time */
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@ -51,29 +51,36 @@ SimuData *CosmoTool::loadFlashMulti(const char *fname, int id, int loadflags)
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data->Omega_Lambda = omegalambda;
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data->Omega_Lambda = omegalambda;
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// particle data
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// particle data
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if (loadflags& NEED_POSITION) {
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for (int i = 0; i < 3; i++) {
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for (int i = 0; i < 3; i++) {
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data->Pos[i] = new float[data->NumPart];
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data->Pos[i] = new float[data->NumPart];
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if (data->Pos[i] == 0) {
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if (data->Pos[i] == 0) {
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delete data;
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delete data;
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return 0;
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return 0;
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}
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}
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}
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} }
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if (loadflags &NEED_VELOCITY) {
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for (int i = 0; i < 3; i++) {
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for (int i = 0; i < 3; i++) {
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data->Vel[i] = new float[data->NumPart];
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data->Vel[i] = new float[data->NumPart];
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if (data->Vel[i] == 0) {
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if (data->Vel[i] == 0) {
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delete data;
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delete data;
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return 0;
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return 0;
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}
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}
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}
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} }
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if (loadflags & NEED_GADGET_ID) {
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data->Id = new int[data->NumPart];
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data->Id = new int[data->NumPart];
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if (data->Id == 0) {
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if (data->Id == 0) {
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delete data;
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delete data;
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return 0;
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return 0;
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}
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}
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}
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int offset = 0;
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int offset = 0;
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if (loadflags &(NEED_GADGET_ID|NEED_POSITION|NEED_VELOCITY))
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h5_read_flash3_particles(&file, &npart, &npart, &offset,
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h5_read_flash3_particles(&file, &npart, &npart, &offset,
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data->Pos[0], data->Pos[1], data->Pos[2],
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data->Pos[0], data->Pos[1], data->Pos[2],
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data->Vel[0], data->Vel[1], data->Vel[2],
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data->Vel[0], data->Vel[1], data->Vel[2],
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@ -81,8 +88,8 @@ SimuData *CosmoTool::loadFlashMulti(const char *fname, int id, int loadflags)
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for (int i = 0; i < 3; i++) {
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for (int i = 0; i < 3; i++) {
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for (int n = 0; n < data->NumPart; n++) {
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for (int n = 0; n < data->NumPart; n++) {
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data->Pos[i][n] = data->Pos[i][n] * data->Hubble / kpc2cm;
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if (loadflags& NEED_POSITION) data->Pos[i][n] = data->Pos[i][n] * data->Hubble / kpc2cm;
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data->Vel[i][n] = data->Vel[i][n] * data->Hubble / km2cm;
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if (loadflags&NEED_VELOCITY) data->Vel[i][n] = data->Vel[i][n] * data->Hubble / km2cm;
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}
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}
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}
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}
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