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Merge branch 'master' of bitbucket.org:glavaux/cosmotool

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This commit is contained in:
Guilhem Lavaux 2014-05-25 10:43:17 +02:00
commit bc655f1362
88 changed files with 377 additions and 106 deletions
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4
CMakeLists.txt
View File

@ -63,12 +63,14 @@ if (ENABLE_SHARP)
SET(SHARP_INCLUDE_PATH ${DEP_BUILD}/include) SET(SHARP_INCLUDE_PATH ${DEP_BUILD}/include)
endif (ENABLE_SHARP) endif (ENABLE_SHARP)
SET(OMPTL_BUILD_DIR ${CMAKE_BINARY_DIR}/omptl-prefix/src/omptl)
ExternalProject_Add(omptl ExternalProject_Add(omptl
URL ${CMAKE_SOURCE_DIR}/external/omptl-20120422.tar.bz2 URL ${CMAKE_SOURCE_DIR}/external/omptl-20120422.tar.bz2
CONFIGURE_COMMAND echo "No configure" CONFIGURE_COMMAND echo "No configure"
BUILD_COMMAND echo "No build" BUILD_COMMAND echo "No build"
INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_directory ${CMAKE_BINARY_DIR}/omptl-prefix/src/omptl ${CMAKE_BINARY_DIR}/external/stage/include/omptl INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_directory ${OMPTL_BUILD_DIR} ${CMAKE_BINARY_DIR}/external/stage/include/omptl
) )
include_directories(${OMPTL_BUILD_DIR}/..)
set(HDF5_FIND_COMPONENTS HL CXX) set(HDF5_FIND_COMPONENTS HL CXX)
if(HDF5_ROOTDIR) if(HDF5_ROOTDIR)

11
build_tools/gather_sources.py
View File

@ -1,5 +1,5 @@
#+ #+
# This is CosmoTool (./build_tools/gather_sources.py) -- Copyright (C) Guilhem Lavaux (2007-2013) # This is CosmoTool (./build_tools/gather_sources.py) -- Copyright (C) Guilhem Lavaux (2007-2014)
# #
# guilhem.lavaux@gmail.com # guilhem.lavaux@gmail.com
# #
@ -55,7 +55,7 @@ def apply_license(license, relimit, filename):
def apply_python_license(filename): def apply_python_license(filename):
license="""#+ license="""#+
# This is CosmoTool (@FILENAME@) -- Copyright (C) Guilhem Lavaux (2007-2013) # This is CosmoTool (@FILENAME@) -- Copyright (C) Guilhem Lavaux (2007-2014)
# #
# guilhem.lavaux@gmail.com # guilhem.lavaux@gmail.com
# #
@ -97,7 +97,7 @@ def apply_python_license(filename):
def apply_cpp_license(filename): def apply_cpp_license(filename):
license="""/*+ license="""/*+
This is CosmoTool (@FILENAME@) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (@FILENAME@) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com
@ -131,13 +131,14 @@ The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms. knowledge of the CeCILL license and that you accept its terms.
+*/ +*/
""" """
relimit = r'^(?s)/\*\+.*\+\*/' relimit = r'^(?s)/\*\+.*\+\*/\n'
print("C++ file: %s" % filename) print("C++ file: %s" % filename)
apply_license(license, relimit, filename) apply_license(license, relimit, filename)
def analyze_tree(prefix, t): def analyze_tree(prefix, t):
for ename,entry in t.items(): for entry in t:
ename = entry.name
if ename == 'external' or ename == 'zobov': if ename == 'external' or ename == 'zobov':
continue continue
if type(entry) == Tree: if type(entry) == Tree:

34
sample/gadgetToArray.cpp
View File

@ -1,3 +1,37 @@
/*+
This is CosmoTool (./sample/gadgetToArray.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#include <cmath> #include <cmath>
#include <iostream> #include <iostream>
#include <cstdlib> #include <cstdlib>

34
sample/gadgetToDensity.cpp
View File

@ -1,3 +1,37 @@
/*+
This is CosmoTool (./sample/gadgetToDensity.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#include <cmath> #include <cmath>
#include <iostream> #include <iostream>
#include <cstdlib> #include <cstdlib>

34
sample/simple3DFilter.cpp
View File

@ -1,3 +1,37 @@
/*+
This is CosmoTool (./sample/simple3DFilter.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#include <cassert> #include <cassert>
#include "yorick.hpp" #include "yorick.hpp"
#include "sphSmooth.hpp" #include "sphSmooth.hpp"

2
sample/testAlgo.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testAlgo.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testAlgo.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testBQueue.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testBQueue.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testBQueue.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testBSP.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testBSP.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testBSP.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testDelaunay.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testDelaunay.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testDelaunay.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testEskow.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testEskow.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testEskow.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

34
sample/testHDF5.cpp
View File

@ -1,3 +1,37 @@
/*+
This is CosmoTool (./sample/testHDF5.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#include <iostream> #include <iostream>
#include <H5Cpp.h> #include <H5Cpp.h>
#include "hdf5_array.hpp" #include "hdf5_array.hpp"

2
sample/testInterpolate.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testInterpolate.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testInterpolate.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testNewton.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testNewton.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testNewton.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testPool.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testPool.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testPool.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testReadFlash.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testReadFlash.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testReadFlash.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testSmooth.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testSmooth.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testSmooth.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/test_cosmopower.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/test_cosmopower.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/test_cosmopower.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/test_fft_calls.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/test_fft_calls.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/test_fft_calls.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/test_healpix_calls.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/test_healpix_calls.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/test_healpix_calls.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testkd.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testkd.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testkd.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testkd2.cpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testkd2.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testkd2.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
sample/testkd3.cpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./sample/testkd3.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./sample/testkd3.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/CMakeLists.txt
View File

@ -88,5 +88,7 @@ endif (BUILD_SHARED_LIBS)
install(DIRECTORY . DESTINATION include/CosmoTool install(DIRECTORY . DESTINATION include/CosmoTool
FILES_MATCHING PATTERN "*.hpp") FILES_MATCHING PATTERN "*.hpp")
install(DIRECTORY ${OMPTL_BUILD_DIR}
DESTINATION include/CosmoTool/omptl)
install(DIRECTORY . DESTINATION include/CosmoTool install(DIRECTORY . DESTINATION include/CosmoTool
FILES_MATCHING PATTERN "*.tcc") FILES_MATCHING PATTERN "*.tcc")

2
src/algo.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/algo.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/algo.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/bqueue.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/bqueue.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/bqueue.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/bsp_simple.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/bsp_simple.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/bsp_simple.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/cic.cpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/cic.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/cic.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/cic.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/cic.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/cic.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/config.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/config.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/config.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/cosmopower.cpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/cosmopower.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/cosmopower.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/cosmopower.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/cosmopower.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/cosmopower.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/dinterpolate.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/dinterpolate.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/dinterpolate.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/eskow.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/eskow.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/eskow.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/field.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/field.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/field.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fixArray.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fixArray.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fixArray.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fortran.cpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fortran.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fortran.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fortran.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fortran.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fortran.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/base_types.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/base_types.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/base_types.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/euclidian_maps.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/euclidian_maps.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/euclidian_maps.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/euclidian_spectrum_1d.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/euclidian_spectrum_1d.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/euclidian_spectrum_1d.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/euclidian_spectrum_1d_bin.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/euclidian_spectrum_1d_bin.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/euclidian_spectrum_1d_bin.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/euclidian_transform.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/euclidian_transform.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/euclidian_transform.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/healpix_alms.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/healpix_alms.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/healpix_alms.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/healpix_map.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/healpix_map.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/healpix_map.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/healpix_spectrum.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/healpix_spectrum.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/healpix_spectrum.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/healpix_transform.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/healpix_transform.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/healpix_transform.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/details/healpix_utility.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/details/healpix_utility.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/details/healpix_utility.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/euclidian.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/euclidian.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/euclidian.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/fft/fftw_calls.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/fft/fftw_calls.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/fft/fftw_calls.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/fourier/healpix.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/fourier/healpix.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/fourier/healpix.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/growthFactor.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/growthFactor.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/growthFactor.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/growthFactor.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/growthFactor.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/growthFactor.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

36
src/h5_readFlash.cpp
View File

@ -1,11 +1,45 @@
/*+ /*+
This is CosmoTool (./src/h5_readFlash.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
/*+
!! !!
This file has been developped by P. M. Sutter This file has been developped by P. M. Sutter
!! !!
+*/ */
/* This file contains the functions that read the data from the HDF5 file /* This file contains the functions that read the data from the HDF5 file
* The functions accept the PARAMESH data through arguments. * The functions accept the PARAMESH data through arguments.
*/ */

36
src/h5_readFlash.hpp
View File

@ -1,4 +1,38 @@
/*+ /*+
This is CosmoTool (./src/h5_readFlash.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
/*+
!!! NOTE !!! !!! NOTE !!!
@ -6,7 +40,7 @@ This file has been developped by P. M. Sutter.
!!!! !!!!
+*/ */
/* This file contains the functions that read the data from the HDF5 file /* This file contains the functions that read the data from the HDF5 file
* The functions accept the PARAMESH data through arguments. * The functions accept the PARAMESH data through arguments.
*/ */

34
src/hdf5_array.hpp
View File

@ -1,3 +1,37 @@
/*+
This is CosmoTool (./src/hdf5_array.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com
This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/
#ifndef __COSMO_HDF5_ARRAY_HPP #ifndef __COSMO_HDF5_ARRAY_HPP
#define __COSMO_HDF5_ARRAY_HPP #define __COSMO_HDF5_ARRAY_HPP

33
src/hdf5_flash.h
View File

@ -1,9 +1,36 @@
/*+ /*+
!! This is CosmoTool (./src/hdf5_flash.h) -- Copyright (C) Guilhem Lavaux (2007-2014)
This particular file has been developped by P. M. Sutter guilhem.lavaux@gmail.com
!! This software is a computer program whose purpose is to provide a toolbox for cosmological
data analysis (e.g. filters, generalized Fourier transforms, power spectra, ...)
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited
liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
+*/ +*/
/* general header file for the HDF 5 IO in FLASH */ /* general header file for the HDF 5 IO in FLASH */

2
src/interpolate.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/interpolate.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/interpolate.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/interpolate.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/interpolate.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/interpolate.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/interpolate3d.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/interpolate3d.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/interpolate3d.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/kdtree_leaf.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/kdtree_leaf.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/kdtree_leaf.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/kdtree_splitters.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/kdtree_splitters.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/kdtree_splitters.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadFlash.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadFlash.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadFlash.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadFlash.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadFlash.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadFlash.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadFlash_dummy.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadFlash_dummy.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadFlash_dummy.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadGadget.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadGadget.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadGadget.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadGadget.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadGadget.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadGadget.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadRamses.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadRamses.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadRamses.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadRamses.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadRamses.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadRamses.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/loadSimu.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/loadSimu.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/loadSimu.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/load_data.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/load_data.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/load_data.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/load_data.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/load_data.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/load_data.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/mach.hpp
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@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/mach.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/mach.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/miniargs.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/miniargs.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/miniargs.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/miniargs.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/miniargs.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/miniargs.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/mykdtree.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/mykdtree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/mykdtree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

1
src/mykdtree.tcc
View File

@ -1,5 +1,6 @@
#include "replicateGenerator.hpp" #include "replicateGenerator.hpp"
#include <cstring> #include <cstring>
#include "omptl/omptl_algorithm"
#include <algorithm> #include <algorithm>
#include <limits> #include <limits>
#include <iostream> #include <iostream>

2
src/newton.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/newton.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/newton.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/octTree.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/octTree.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/octTree.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/octTree.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/octTree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/octTree.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/pool.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/pool.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/pool.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/powerSpectrum.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/powerSpectrum.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/powerSpectrum.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/powerSpectrum.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/powerSpectrum.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/powerSpectrum.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/replicateGenerator.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/replicateGenerator.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/replicateGenerator.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/sparseGrid.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/sparseGrid.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/sparseGrid.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/sphSmooth.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/sphSmooth.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/sphSmooth.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/yorick.hpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/yorick.hpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/yorick.hpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/yorick_nc3.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/yorick_nc3.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/yorick_nc3.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com

2
src/yorick_nc4.cpp
View File

@ -1,5 +1,5 @@
/*+ /*+
This is CosmoTool (./src/yorick_nc4.cpp) -- Copyright (C) Guilhem Lavaux (2007-2013) This is CosmoTool (./src/yorick_nc4.cpp) -- Copyright (C) Guilhem Lavaux (2007-2014)
guilhem.lavaux@gmail.com guilhem.lavaux@gmail.com