Merge branch 'master' of bitbucket.org:glavaux/cosmotool
This commit is contained in:
Guilhem Lavaux
commit
a869335472
393
FindHDF5.cmake
393
FindHDF5.cmake
@ -1,351 +1,86 @@
|
|||||||
# - Find HDF5, a library for reading and writing self describing array data.
|
|
||||||
#
|
#
|
||||||
# This module invokes the HDF5 wrapper compiler that should be installed
|
# To be used by projects that make use of Cmakeified hdf5-1.8.17
|
||||||
# alongside HDF5. Depending upon the HDF5 Configuration, the wrapper compiler
|
|
||||||
# is called either h5cc or h5pcc. If this succeeds, the module will then call
|
|
||||||
# the compiler with the -show argument to see what flags are used when compiling
|
|
||||||
# an HDF5 client application.
|
|
||||||
#
|
#
|
||||||
# The module will optionally accept the COMPONENTS argument. If no COMPONENTS
|
|
||||||
# are specified, then the find module will default to finding only the HDF5 C
|
|
||||||
# library. If one or more COMPONENTS are specified, the module will attempt to
|
|
||||||
# find the language bindings for the specified components. The only valid
|
|
||||||
# components are C, CXX, Fortran, HL, and Fortran_HL. If the COMPONENTS
|
|
||||||
# argument is not given, the module will attempt to find only the C bindings.
|
|
||||||
#
|
|
||||||
# On UNIX systems, this module will read the variable HDF5_USE_STATIC_LIBRARIES
|
|
||||||
# to determine whether or not to prefer a static link to a dynamic link for HDF5
|
|
||||||
# and all of it's dependencies. To use this feature, make sure that the
|
|
||||||
# HDF5_USE_STATIC_LIBRARIES variable is set before the call to find_package.
|
|
||||||
#
|
|
||||||
# To provide the module with a hint about where to find your HDF5 installation,
|
|
||||||
# you can set the environment variable HDF5_ROOT. The Find module will then
|
|
||||||
# look in this path when searching for HDF5 executables, paths, and libraries.
|
|
||||||
#
|
|
||||||
# In addition to finding the includes and libraries required to compile an HDF5
|
|
||||||
# client application, this module also makes an effort to find tools that come
|
|
||||||
# with the HDF5 distribution that may be useful for regression testing.
|
|
||||||
#
|
|
||||||
# This module will define the following variables:
|
|
||||||
# HDF5_INCLUDE_DIRS - Location of the hdf5 includes
|
|
||||||
# HDF5_INCLUDE_DIR - Location of the hdf5 includes (deprecated)
|
|
||||||
# HDF5_DEFINITIONS - Required compiler definitions for HDF5
|
|
||||||
# HDF5_C_LIBRARIES - Required libraries for the HDF5 C bindings.
|
|
||||||
# HDF5_CXX_LIBRARIES - Required libraries for the HDF5 C++ bindings
|
|
||||||
# HDF5_Fortran_LIBRARIES - Required libraries for the HDF5 Fortran bindings
|
|
||||||
# HDF5_HL_LIBRARIES - Required libraries for the HDF5 high level API
|
|
||||||
# HDF5_Fortran_HL_LIBRARIES - Required libraries for the high level Fortran
|
|
||||||
# bindings.
|
|
||||||
# HDF5_LIBRARIES - Required libraries for all requested bindings
|
|
||||||
# HDF5_FOUND - true if HDF5 was found on the system
|
|
||||||
# HDF5_LIBRARY_DIRS - the full set of library directories
|
|
||||||
# HDF5_IS_PARALLEL - Whether or not HDF5 was found with parallel IO support
|
|
||||||
# HDF5_C_COMPILER_EXECUTABLE - the path to the HDF5 C wrapper compiler
|
|
||||||
# HDF5_CXX_COMPILER_EXECUTABLE - the path to the HDF5 C++ wrapper compiler
|
|
||||||
# HDF5_Fortran_COMPILER_EXECUTABLE - the path to the HDF5 Fortran wrapper compiler
|
|
||||||
# HDF5_DIFF_EXECUTABLE - the path to the HDF5 dataset comparison tool
|
|
||||||
|
|
||||||
#=============================================================================
|
|
||||||
# Copyright 2009 Kitware, Inc.
|
|
||||||
#
|
#
|
||||||
# Distributed under the OSI-approved BSD License (the "License");
|
# Find the HDF5 includes and get all installed hdf5 library settings from
|
||||||
# see accompanying file Copyright.txt for details.
|
# HDF5-config.cmake file : Requires a CMake compatible hdf5-1.8.5 or later
|
||||||
|
# for this feature to work. The following vars are set if hdf5 is found.
|
||||||
#
|
#
|
||||||
# This software is distributed WITHOUT ANY WARRANTY; without even the
|
# HDF5_FOUND - True if found, otherwise all other vars are undefined
|
||||||
# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
|
# HDF5_INCLUDE_DIR - The include dir for main *.h files
|
||||||
# See the License for more information.
|
# HDF5_FORTRAN_INCLUDE_DIR - The include dir for fortran modules and headers
|
||||||
#=============================================================================
|
# HDF5_VERSION_STRING - full version (e.g. 1.8.17)
|
||||||
# (To distribute this file outside of CMake, substitute the full
|
# HDF5_VERSION_MAJOR - major part of version (e.g. 1.8)
|
||||||
# License text for the above reference.)
|
# HDF5_VERSION_MINOR - minor part (e.g. 17)
|
||||||
|
#
|
||||||
# This module is maintained by Will Dicharry <wdicharry@stellarscience.com>.
|
# The following boolean vars will be defined
|
||||||
|
# HDF5_ENABLE_PARALLEL - 1 if HDF5 parallel supported
|
||||||
|
# HDF5_BUILD_FORTRAN - 1 if HDF5 was compiled with fortran on
|
||||||
|
# HDF5_BUILD_CPP_LIB - 1 if HDF5 was compiled with cpp on
|
||||||
|
# HDF5_BUILD_TOOLS - 1 if HDF5 was compiled with tools on
|
||||||
|
# HDF5_BUILD_HL_LIB - 1 if HDF5 was compiled with high level on
|
||||||
|
# HDF5_BUILD_HL_CPP_LIB - 1 if HDF5 was compiled with high level and cpp on
|
||||||
|
#
|
||||||
|
# Target names that are valid (depending on enabled options)
|
||||||
|
# will be the following
|
||||||
|
#
|
||||||
|
# hdf5 : HDF5 C library
|
||||||
|
# hdf5_tools : the tools library
|
||||||
|
# hdf5_f90cstub : used by Fortran to C interface
|
||||||
|
# hdf5_fortran : Fortran HDF5 library
|
||||||
|
# hdf5_cpp : HDF5 cpp interface library
|
||||||
|
# hdf5_hl : High Level library
|
||||||
|
# hdf5_hl_f90cstub : used by Fortran to C interface to High Level library
|
||||||
|
# hdf5_hl_fortran : Fortran High Level library
|
||||||
|
# hdf5_hl_cpp : High Level cpp interface library
|
||||||
|
#
|
||||||
|
# To aid in finding HDF5 as part of a subproject set
|
||||||
|
# HDF5_ROOT_DIR_HINT to the location where hdf5-config.cmake lies
|
||||||
|
|
||||||
include (SelectLibraryConfigurations)
|
include (SelectLibraryConfigurations)
|
||||||
include (FindPackageHandleStandardArgs)
|
include (FindPackageHandleStandardArgs)
|
||||||
|
|
||||||
# List of the valid HDF5 components
|
# The HINTS option should only be used for values computed from the system.
|
||||||
set( HDF5_VALID_COMPONENTS
|
set (_HDF5_HINTS
|
||||||
C
|
$ENV{HOME}/.local
|
||||||
CXX
|
$ENV{HDF5_ROOT}
|
||||||
Fortran
|
$ENV{HDF5_ROOT_DIR_HINT}
|
||||||
HL
|
)
|
||||||
Fortran_HL
|
# Hard-coded guesses should still go in PATHS. This ensures that the user
|
||||||
|
# environment can always override hard guesses.
|
||||||
|
set (_HDF5_PATHS
|
||||||
|
$ENV{HOME}/.local
|
||||||
|
$ENV{HDF5_ROOT}
|
||||||
|
$ENV{HDF5_ROOT_DIR_HINT}
|
||||||
|
/usr/lib/hdf5
|
||||||
|
/usr/share/hdf5
|
||||||
|
/usr/local/hdf5
|
||||||
|
/usr/local/hdf5/share
|
||||||
)
|
)
|
||||||
|
|
||||||
# Validate the list of find components.
|
FIND_PATH (HDF5_ROOT_DIR "hdf5-config.cmake"
|
||||||
if( NOT HDF5_FIND_COMPONENTS )
|
HINTS ${_HDF5_HINTS}
|
||||||
set( HDF5_LANGUAGE_BINDINGS "C" )
|
PATHS ${_HDF5_PATHS}
|
||||||
else()
|
PATH_SUFFIXES
|
||||||
# add the extra specified components, ensuring that they are valid.
|
cmake/hdf5
|
||||||
foreach( component ${HDF5_FIND_COMPONENTS} )
|
lib/cmake/hdf5
|
||||||
list( FIND HDF5_VALID_COMPONENTS ${component} component_location )
|
share/cmake/hdf5
|
||||||
if( ${component_location} EQUAL -1 )
|
|
||||||
message( FATAL_ERROR
|
|
||||||
"\"${component}\" is not a valid HDF5 component." )
|
|
||||||
else()
|
|
||||||
list( APPEND HDF5_LANGUAGE_BINDINGS ${component} )
|
|
||||||
endif()
|
|
||||||
endforeach()
|
|
||||||
endif()
|
|
||||||
|
|
||||||
# try to find the HDF5 wrapper compilers
|
|
||||||
find_program( HDF5_C_COMPILER_EXECUTABLE
|
|
||||||
NAMES h5cc h5pcc
|
|
||||||
HINTS ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES bin Bin
|
|
||||||
DOC "HDF5 Wrapper compiler. Used only to detect HDF5 compile flags." )
|
|
||||||
mark_as_advanced( HDF5_C_COMPILER_EXECUTABLE )
|
|
||||||
|
|
||||||
find_program( HDF5_CXX_COMPILER_EXECUTABLE
|
|
||||||
NAMES h5c++ h5pc++
|
|
||||||
HINTS ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES bin Bin
|
|
||||||
DOC "HDF5 C++ Wrapper compiler. Used only to detect HDF5 compile flags." )
|
|
||||||
mark_as_advanced( HDF5_CXX_COMPILER_EXECUTABLE )
|
|
||||||
|
|
||||||
find_program( HDF5_Fortran_COMPILER_EXECUTABLE
|
|
||||||
NAMES h5fc h5pfc
|
|
||||||
HINTS ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES bin Bin
|
|
||||||
DOC "HDF5 Fortran Wrapper compiler. Used only to detect HDF5 compile flags." )
|
|
||||||
mark_as_advanced( HDF5_Fortran_COMPILER_EXECUTABLE )
|
|
||||||
|
|
||||||
find_program( HDF5_DIFF_EXECUTABLE
|
|
||||||
NAMES h5diff
|
|
||||||
HINTS ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES bin Bin
|
|
||||||
DOC "HDF5 file differencing tool." )
|
|
||||||
mark_as_advanced( HDF5_DIFF_EXECUTABLE )
|
|
||||||
|
|
||||||
# Invoke the HDF5 wrapper compiler. The compiler return value is stored to the
|
|
||||||
# return_value argument, the text output is stored to the output variable.
|
|
||||||
macro( _HDF5_invoke_compiler language output return_value )
|
|
||||||
if( HDF5_${language}_COMPILER_EXECUTABLE )
|
|
||||||
exec_program( ${HDF5_${language}_COMPILER_EXECUTABLE}
|
|
||||||
ARGS -show
|
|
||||||
OUTPUT_VARIABLE ${output}
|
|
||||||
RETURN_VALUE ${return_value}
|
|
||||||
)
|
|
||||||
if( ${${return_value}} EQUAL 0 )
|
|
||||||
# do nothing
|
|
||||||
else()
|
|
||||||
message( STATUS
|
|
||||||
"Unable to determine HDF5 ${language} flags from HDF5 wrapper." )
|
|
||||||
endif()
|
|
||||||
endif()
|
|
||||||
endmacro()
|
|
||||||
|
|
||||||
# Parse a compile line for definitions, includes, library paths, and libraries.
|
|
||||||
macro( _HDF5_parse_compile_line
|
|
||||||
compile_line_var
|
|
||||||
include_paths
|
|
||||||
definitions
|
|
||||||
library_paths
|
|
||||||
libraries )
|
|
||||||
|
|
||||||
# Match the include paths
|
|
||||||
string( REGEX MATCHALL "-I([^\" ]+)" include_path_flags
|
|
||||||
"${${compile_line_var}}"
|
|
||||||
)
|
|
||||||
foreach( IPATH ${include_path_flags} )
|
|
||||||
string( REGEX REPLACE "^-I" "" IPATH ${IPATH} )
|
|
||||||
string( REGEX REPLACE "//" "/" IPATH ${IPATH} )
|
|
||||||
list( APPEND ${include_paths} ${IPATH} )
|
|
||||||
endforeach()
|
|
||||||
|
|
||||||
# Match the definitions
|
|
||||||
string( REGEX MATCHALL "-D[^ ]*" definition_flags "${${compile_line_var}}" )
|
|
||||||
foreach( DEF ${definition_flags} )
|
|
||||||
list( APPEND ${definitions} ${DEF} )
|
|
||||||
endforeach()
|
|
||||||
|
|
||||||
# Match the library paths
|
|
||||||
string( REGEX MATCHALL "-L([^\" ]+|\"[^\"]+\")" library_path_flags
|
|
||||||
"${${compile_line_var}}"
|
|
||||||
)
|
)
|
||||||
|
|
||||||
foreach( LPATH ${library_path_flags} )
|
FIND_PATH (HDF5_INCLUDE_DIRS "H5public.h"
|
||||||
string( REGEX REPLACE "^-L" "" LPATH ${LPATH} )
|
HINTS ${_HDF5_HINTS}
|
||||||
string( REGEX REPLACE "//" "/" LPATH ${LPATH} )
|
PATHS ${_HDF5_PATHS}
|
||||||
list( APPEND ${library_paths} ${LPATH} )
|
|
||||||
endforeach()
|
|
||||||
|
|
||||||
# now search for the library names specified in the compile line (match -l...)
|
|
||||||
# match only -l's preceded by a space or comma
|
|
||||||
# this is to exclude directory names like xxx-linux/
|
|
||||||
string( REGEX MATCHALL "[, ]-l([^\", ]+)" library_name_flags
|
|
||||||
"${${compile_line_var}}" )
|
|
||||||
# strip the -l from all of the library flags and add to the search list
|
|
||||||
foreach( LIB ${library_name_flags} )
|
|
||||||
string( REGEX REPLACE "^[, ]-l" "" LIB ${LIB} )
|
|
||||||
list( APPEND ${libraries} ${LIB} )
|
|
||||||
endforeach()
|
|
||||||
endmacro()
|
|
||||||
|
|
||||||
# Try to find HDF5 using an installed hdf5-config.cmake
|
|
||||||
if( NOT HDF5_FOUND )
|
|
||||||
find_package( HDF5 QUIET NO_MODULE )
|
|
||||||
if( HDF5_FOUND )
|
|
||||||
set( HDF5_INCLUDE_DIRS ${HDF5_INCLUDE_DIR} )
|
|
||||||
set( HDF5_LIBRARIES )
|
|
||||||
set( HDF5_C_TARGET hdf5 )
|
|
||||||
set( HDF5_CXX_TARGET hdf5_cpp )
|
|
||||||
set( HDF5_HL_TARGET hdf5_hl )
|
|
||||||
set( HDF5_Fortran_TARGET hdf5_fortran )
|
|
||||||
set( HDF5_Fortran_HL_TARGET hdf5_hl_fortran )
|
|
||||||
foreach( _component ${HDF5_LANGUAGE_BINDINGS} )
|
|
||||||
list( FIND HDF5_VALID_COMPONENTS ${_component} _component_location )
|
|
||||||
get_target_property( _comp_location ${HDF5_${_component}_TARGET} LOCATION )
|
|
||||||
if( _comp_location )
|
|
||||||
set( HDF5_${_component}_LIBRARY ${_comp_location} CACHE PATH
|
|
||||||
"HDF5 ${_component} library" )
|
|
||||||
mark_as_advanced( HDF5_${_component}_LIBRARY )
|
|
||||||
list( APPEND HDF5_LIBRARIES ${HDF5_${_component}_LIBRARY} )
|
|
||||||
endif()
|
|
||||||
endforeach()
|
|
||||||
endif()
|
|
||||||
endif()
|
|
||||||
|
|
||||||
if( NOT HDF5_FOUND )
|
|
||||||
_HDF5_invoke_compiler( C HDF5_C_COMPILE_LINE HDF5_C_RETURN_VALUE )
|
|
||||||
_HDF5_invoke_compiler( CXX HDF5_CXX_COMPILE_LINE HDF5_CXX_RETURN_VALUE )
|
|
||||||
_HDF5_invoke_compiler( Fortran HDF5_Fortran_COMPILE_LINE HDF5_Fortran_RETURN_VALUE )
|
|
||||||
|
|
||||||
# seed the initial lists of libraries to find with items we know we need
|
|
||||||
set( HDF5_C_LIBRARY_NAMES_INIT hdf5 )
|
|
||||||
set( HDF5_HL_LIBRARY_NAMES_INIT hdf5_hl ${HDF5_C_LIBRARY_NAMES_INIT} )
|
|
||||||
set( HDF5_CXX_LIBRARY_NAMES_INIT hdf5_cpp ${HDF5_C_LIBRARY_NAMES_INIT} )
|
|
||||||
set( HDF5_Fortran_LIBRARY_NAMES_INIT hdf5_fortran
|
|
||||||
${HDF5_C_LIBRARY_NAMES_INIT} )
|
|
||||||
set( HDF5_Fortran_HL_LIBRARY_NAMES_INIT hdf5hl_fortran
|
|
||||||
${HDF5_Fortran_LIBRARY_NAMES_INIT} )
|
|
||||||
|
|
||||||
foreach( LANGUAGE ${HDF5_LANGUAGE_BINDINGS} )
|
|
||||||
if( HDF5_${LANGUAGE}_COMPILE_LINE )
|
|
||||||
_HDF5_parse_compile_line( HDF5_${LANGUAGE}_COMPILE_LINE
|
|
||||||
HDF5_${LANGUAGE}_INCLUDE_FLAGS
|
|
||||||
HDF5_${LANGUAGE}_DEFINITIONS
|
|
||||||
HDF5_${LANGUAGE}_LIBRARY_DIRS
|
|
||||||
HDF5_${LANGUAGE}_LIBRARY_NAMES
|
|
||||||
)
|
|
||||||
|
|
||||||
# take a guess that the includes may be in the 'include' sibling
|
|
||||||
# directory of a library directory.
|
|
||||||
foreach( dir ${HDF5_${LANGUAGE}_LIBRARY_DIRS} )
|
|
||||||
list( APPEND HDF5_${LANGUAGE}_INCLUDE_FLAGS ${dir}/../include )
|
|
||||||
endforeach()
|
|
||||||
endif()
|
|
||||||
|
|
||||||
# set the definitions for the language bindings.
|
|
||||||
list( APPEND HDF5_DEFINITIONS ${HDF5_${LANGUAGE}_DEFINITIONS} )
|
|
||||||
|
|
||||||
# find the HDF5 include directories
|
|
||||||
if(${LANGUAGE} MATCHES "Fortran.*")
|
|
||||||
set(HDF5_INCLUDE_FILENAME hdf5.mod)
|
|
||||||
else()
|
|
||||||
set(HDF5_INCLUDE_FILENAME hdf5.h)
|
|
||||||
endif()
|
|
||||||
|
|
||||||
find_path( HDF5_${LANGUAGE}_INCLUDE_DIR ${HDF5_INCLUDE_FILENAME}
|
|
||||||
HINTS
|
|
||||||
${HDF5_${LANGUAGE}_INCLUDE_FLAGS}
|
|
||||||
ENV
|
|
||||||
HDF5_ROOT
|
|
||||||
PATHS
|
|
||||||
$ENV{HOME}/.local/include
|
|
||||||
PATH_SUFFIXES
|
PATH_SUFFIXES
|
||||||
include
|
include
|
||||||
Include
|
Include
|
||||||
)
|
)
|
||||||
mark_as_advanced( HDF5_${LANGUAGE}_INCLUDE_DIR )
|
|
||||||
list( APPEND HDF5_INCLUDE_DIRS ${HDF5_${LANGUAGE}_INCLUDE_DIR} )
|
|
||||||
|
|
||||||
set( HDF5_${LANGUAGE}_LIBRARY_NAMES
|
|
||||||
${HDF5_${LANGUAGE}_LIBRARY_NAMES_INIT}
|
|
||||||
${HDF5_${LANGUAGE}_LIBRARY_NAMES} )
|
|
||||||
|
|
||||||
# find the HDF5 libraries
|
|
||||||
foreach( LIB ${HDF5_${LANGUAGE}_LIBRARY_NAMES} )
|
|
||||||
if( UNIX AND HDF5_USE_STATIC_LIBRARIES )
|
|
||||||
# According to bug 1643 on the CMake bug tracker, this is the
|
|
||||||
# preferred method for searching for a static library.
|
|
||||||
# See http://www.cmake.org/Bug/view.php?id=1643. We search
|
|
||||||
# first for the full static library name, but fall back to a
|
|
||||||
# generic search on the name if the static search fails.
|
|
||||||
set( THIS_LIBRARY_SEARCH_DEBUG lib${LIB}d.a ${LIB}d )
|
|
||||||
set( THIS_LIBRARY_SEARCH_RELEASE lib${LIB}.a ${LIB} )
|
|
||||||
else()
|
|
||||||
set( THIS_LIBRARY_SEARCH_DEBUG ${LIB}d )
|
|
||||||
set( THIS_LIBRARY_SEARCH_RELEASE ${LIB} )
|
|
||||||
endif()
|
|
||||||
find_library( HDF5_${LIB}_LIBRARY_DEBUG
|
|
||||||
NAMES ${THIS_LIBRARY_SEARCH_DEBUG}
|
|
||||||
HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS}
|
|
||||||
ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES lib Lib )
|
|
||||||
find_library( HDF5_${LIB}_LIBRARY_RELEASE
|
|
||||||
NAMES ${THIS_LIBRARY_SEARCH_RELEASE}
|
|
||||||
HINTS ${HDF5_${LANGUAGE}_LIBRARY_DIRS}
|
|
||||||
ENV HDF5_ROOT
|
|
||||||
PATH_SUFFIXES lib Lib )
|
|
||||||
select_library_configurations( HDF5_${LIB} )
|
|
||||||
list(APPEND HDF5_${LANGUAGE}_LIBRARIES ${HDF5_${LIB}_LIBRARY})
|
|
||||||
endforeach()
|
|
||||||
list( APPEND HDF5_LIBRARY_DIRS ${HDF5_${LANGUAGE}_LIBRARY_DIRS} )
|
|
||||||
|
|
||||||
# Append the libraries for this language binding to the list of all
|
|
||||||
# required libraries.
|
|
||||||
list(APPEND HDF5_LIBRARIES ${HDF5_${LANGUAGE}_LIBRARIES})
|
|
||||||
endforeach()
|
|
||||||
|
|
||||||
# We may have picked up some duplicates in various lists during the above
|
|
||||||
# process for the language bindings (both the C and C++ bindings depend on
|
|
||||||
# libz for example). Remove the duplicates. It appears that the default
|
|
||||||
# CMake behavior is to remove duplicates from the end of a list. However,
|
|
||||||
# for link lines, this is incorrect since unresolved symbols are searched
|
|
||||||
# for down the link line. Therefore, we reverse the list, remove the
|
|
||||||
# duplicates, and then reverse it again to get the duplicates removed from
|
|
||||||
# the beginning.
|
|
||||||
macro( _remove_duplicates_from_beginning _list_name )
|
|
||||||
list( REVERSE ${_list_name} )
|
|
||||||
list( REMOVE_DUPLICATES ${_list_name} )
|
|
||||||
list( REVERSE ${_list_name} )
|
|
||||||
endmacro()
|
|
||||||
|
|
||||||
if( HDF5_INCLUDE_DIRS )
|
|
||||||
_remove_duplicates_from_beginning( HDF5_INCLUDE_DIRS )
|
|
||||||
endif()
|
|
||||||
if( HDF5_LIBRARY_DIRS )
|
|
||||||
_remove_duplicates_from_beginning( HDF5_LIBRARY_DIRS )
|
|
||||||
endif()
|
|
||||||
|
|
||||||
# If the HDF5 include directory was found, open H5pubconf.h to determine if
|
|
||||||
# HDF5 was compiled with parallel IO support
|
|
||||||
set( HDF5_IS_PARALLEL FALSE )
|
|
||||||
foreach( _dir IN LISTS HDF5_INCLUDE_DIRS )
|
|
||||||
if( EXISTS "${_dir}/H5pubconf.h" )
|
|
||||||
file( STRINGS "${_dir}/H5pubconf.h"
|
|
||||||
HDF5_HAVE_PARALLEL_DEFINE
|
|
||||||
REGEX "HAVE_PARALLEL 1" )
|
|
||||||
if( HDF5_HAVE_PARALLEL_DEFINE )
|
|
||||||
set( HDF5_IS_PARALLEL TRUE )
|
|
||||||
endif()
|
|
||||||
endif()
|
|
||||||
endforeach()
|
|
||||||
set( HDF5_IS_PARALLEL ${HDF5_IS_PARALLEL} CACHE BOOL
|
|
||||||
"HDF5 library compiled with parallel IO support" )
|
|
||||||
mark_as_advanced( HDF5_IS_PARALLEL )
|
|
||||||
|
|
||||||
# For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
|
# For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
|
||||||
# HDF5_INCLUDE_DIRS
|
# HDF5_INCLUDE_DIRS
|
||||||
if( HDF5_INCLUDE_DIRS )
|
|
||||||
set ( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
|
set ( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
|
||||||
endif()
|
|
||||||
|
|
||||||
endif()
|
|
||||||
|
|
||||||
find_package_handle_standard_args( HDF5 DEFAULT_MSG
|
|
||||||
HDF5_LIBRARIES
|
|
||||||
HDF5_INCLUDE_DIRS
|
|
||||||
)
|
|
||||||
|
|
||||||
|
if (HDF5_INCLUDE_DIR)
|
||||||
|
set (HDF5_FOUND "YES")
|
||||||
|
include (${HDF5_ROOT_DIR}/hdf5-config.cmake)
|
||||||
|
endif (HDF5_INCLUDE_DIR)
|
||||||
|
|||||||
5
external/external_build.cmake
vendored
5
external/external_build.cmake
vendored
@ -86,7 +86,10 @@ else (INTERNAL_HDF5)
|
|||||||
if(HDF5_ROOTDIR)
|
if(HDF5_ROOTDIR)
|
||||||
SET(ENV{HDF5_ROOT} ${HDF5_ROOTDIR})
|
SET(ENV{HDF5_ROOT} ${HDF5_ROOTDIR})
|
||||||
endif(HDF5_ROOTDIR)
|
endif(HDF5_ROOTDIR)
|
||||||
find_package(HDF5 COMPONENTS C CXX HL)
|
find_package(HDF5 COMPONENTS C CXX HL static)
|
||||||
|
set(HDF5_LIBRARIES ${HDF5_C_STATIC_LIBRARY} CACHE STRING "HDF5 lib" FORCE)
|
||||||
|
set(HDF5_HL_LIBRARIES ${HDF5_HL_STATIC_LIBRARY} CACHE STRING "HDF5 HL lib" FORCE)
|
||||||
|
set(HDF5_CXX_LIBRARIES ${HDF5_CXX_STATIC_LIBRARY} CACHE STRING "HDF5 C++ lib" FORCE)
|
||||||
endif (INTERNAL_HDF5)
|
endif (INTERNAL_HDF5)
|
||||||
|
|
||||||
foreach(include_dir ${HDF5_INCLUDE_DIR})
|
foreach(include_dir ${HDF5_INCLUDE_DIR})
|
||||||
|
|||||||
@ -202,6 +202,29 @@ namespace CosmoTool {
|
|||||||
}
|
}
|
||||||
};
|
};
|
||||||
|
|
||||||
|
class hdf5_StringType
|
||||||
|
{
|
||||||
|
public:
|
||||||
|
H5::StrType type;
|
||||||
|
|
||||||
|
hdf5_StringType()
|
||||||
|
: type(0, H5T_VARIABLE)
|
||||||
|
{
|
||||||
|
}
|
||||||
|
|
||||||
|
static const hdf5_StringType *ctype()
|
||||||
|
{
|
||||||
|
static hdf5_StringType singleton;
|
||||||
|
return &singleton;
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
|
template<> struct get_hdf5_data_type<std::string> {
|
||||||
|
static H5::DataType type() {
|
||||||
|
return hdf5_StringType::ctype()->type;
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
class hdf5_BoolType
|
class hdf5_BoolType
|
||||||
{
|
{
|
||||||
public:
|
public:
|
||||||
@ -286,7 +309,7 @@ namespace CosmoTool {
|
|||||||
|
|
||||||
template<typename ArrayType>
|
template<typename ArrayType>
|
||||||
void hdf5_check_array(ArrayType& data, std::vector<hsize_t>& dims) {
|
void hdf5_check_array(ArrayType& data, std::vector<hsize_t>& dims) {
|
||||||
for (long i = 0; i < data.num_dimensions(); i++) {
|
for (size_t i = 0; i < data.num_dimensions(); i++) {
|
||||||
if (data.shape()[i] != dims[i]) {
|
if (data.shape()[i] != dims[i]) {
|
||||||
throw InvalidDimensions();
|
throw InvalidDimensions();
|
||||||
}
|
}
|
||||||
@ -295,7 +318,7 @@ namespace CosmoTool {
|
|||||||
|
|
||||||
template<typename ArrayType>
|
template<typename ArrayType>
|
||||||
void hdf5_weak_check_array(ArrayType& data, std::vector<hsize_t>& dims) {
|
void hdf5_weak_check_array(ArrayType& data, std::vector<hsize_t>& dims) {
|
||||||
for (long i = 0; i < data.num_dimensions(); i++) {
|
for (size_t i = 0; i < data.num_dimensions(); i++) {
|
||||||
if (data.index_bases()[i] < 0) {
|
if (data.index_bases()[i] < 0) {
|
||||||
// Negative indexes are not supported right now.
|
// Negative indexes are not supported right now.
|
||||||
throw InvalidDimensions();
|
throw InvalidDimensions();
|
||||||
@ -326,7 +349,7 @@ namespace CosmoTool {
|
|||||||
H5::DataSpace dataspace = dataset.getSpace();
|
H5::DataSpace dataspace = dataset.getSpace();
|
||||||
std::vector<hsize_t> dimensions(data.num_dimensions());
|
std::vector<hsize_t> dimensions(data.num_dimensions());
|
||||||
|
|
||||||
if (dataspace.getSimpleExtentNdims() != data.num_dimensions())
|
if ((size_t)dataspace.getSimpleExtentNdims() != (size_t)data.num_dimensions())
|
||||||
{
|
{
|
||||||
throw InvalidDimensions();
|
throw InvalidDimensions();
|
||||||
}
|
}
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user