Fixed bug in CosmoPower/ Eisenstein & Hu
This commit is contained in:
Guilhem Lavaux
parent
b7392204ad
commit
9629b24487
@ -1,5 +1,6 @@
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from libcpp cimport bool
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from libcpp cimport string as cppstring
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from libcpp cimport vector as cppvector
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import numpy as np
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cimport numpy as np
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from cpython cimport PyObject, Py_INCREF
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@ -29,7 +30,7 @@ cdef extern from "cic.hpp" namespace "CosmoTool":
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@cython.cdivision(True)
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@cython.wraparound(False)
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def leanCic(float[:,:] particles, float L, int Resolution):
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cdef CICParticles p
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cdef cppvector.vector[CICParticles] *p
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cdef CICFilter *cic
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cdef np.uint64_t i
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cdef CICType *field
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@ -40,25 +41,34 @@ def leanCic(float[:,:] particles, float L, int Resolution):
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cdef np.uint64_t j
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cic = new CICFilter(Resolution, L)
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print("Reset mesh")
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cic.resetMesh()
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if particles.shape[1] != 3:
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raise ValueError("Particles must be Nx3 array")
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p.mass = 1
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for i in xrange(particles.shape[0]):
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p.coords[0] = particles[i,0]
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p.coords[1] = particles[i,1]
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p.coords[2] = particles[i,2]
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cic.putParticles(&p, 1)
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print("Inserting particles")
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# p = new cppvector.vector[CICParticles](particles.shape[0])
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# for i in xrange(particles.shape[0]):
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# *p[i].mass = 1
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# *p[i].coords[0] = particles[i,0]
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# *p[i].coords[1] = particles[i,1]
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# *p[i].coords[2] = particles[i,2]
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# cic.putParticles(&p[0], particles.shape[0])
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del p
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print("Done")
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field = <CICType*>0
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dummyRes = 0
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cic.getDensityField(field, dummyRes)
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print("Got to allocate a numpy %dx%dx%d" % (dummyRes, dummyRes,dummyRes))
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out_field = np.empty((dummyRes, dummyRes, dummyRes), dtype=np.float64)
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out_field0 = out_field.reshape(out_field.size)
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out_field_buf = out_field
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print("Copy")
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for j in xrange(out_field_buf.size):
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out_field_buf[j] = field[j]
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@ -44,7 +44,7 @@ cdef extern from "cosmopower.hpp" namespace "CosmoTool":
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void setFunction(CosmoFunction)
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void updateCosmology()
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void updatePhysicalCosmology()
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void normalize(double)
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void normalize(double,double)
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void setNormalization(double)
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double power(double)
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@ -75,7 +75,10 @@ cdef class CosmologyPower:
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self.power.updateCosmology()
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def normalize(self,s8,k_max=-1):
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def setNormalization(self,A):
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self.power.setNormalization(A)
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def normalize(self,s8,k_min=-1,k_max=-1):
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"""normalize(self, sigma8)
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Compute the normalization of the power spectrum using sigma8.
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@ -84,7 +87,7 @@ cdef class CosmologyPower:
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sigma8 (float): standard deviation of density field smoothed at 8 Mpc/h
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"""
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self.power.SIGMA8 = s8
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self.power.normalize(k_max)
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self.power.normalize(k_min, k_max)
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def setFunction(self,funcname):
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@ -186,6 +186,11 @@ void CICFilter::putParticles(CICParticles *particles, uint32_t N)
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for (long p = tUsedMin[t]; p < tUsedMax[t]; p++)
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densityGrid[p] += threadedDensity[t][p];
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}
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for (int t = 0; t < threadUsed; t++)
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{
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delete[] threadedDensity;
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}
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}
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void CICFilter::getDensityField(CICType*& field, uint32_t& res)
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@ -90,7 +90,8 @@ static double powC(double q, double alpha_c)
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static double T_tilde_0(double q, double alpha_c, double beta_c)
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{
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double a = log(M_E + 1.8 * beta_c * q);
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static const double c_E = 2.718282; //M_E;
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double a = log(c_E + 1.8 * beta_c * q);
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return a / ( a + powC(q, alpha_c) * q * q);
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}
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@ -123,6 +124,7 @@ double CosmoPower::powerEfstathiou(double k)
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void CosmoPower::updateHuWigglesConsts()
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{
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double k_silk = 1.6 * pow(OMEGA_B * h * h, 0.52) * pow(OmegaEff, 0.73) * (1 + pow(10.4 * OmegaEff, -0.95));
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double z_eq = 2.50e4 * OmegaEff * pow(Theta_27, -4);
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//double s = 44.5 * log(9.83 / OmegaEff) / (sqrt(1 + 10 * pow(OMEGA_B * h * h, 0.75)));
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@ -130,7 +132,7 @@ void CosmoPower::updateHuWigglesConsts()
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double b1_zd = 0.313 * pow(OmegaEff, -0.419) * (1 + 0.607 * pow(OmegaEff, 0.674));
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double b2_zd = 0.238 * pow(OmegaEff, 0.223);
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double z_d = 1291 * pow(OmegaEff, 0.251) / (1 + 0.659 * pow(OmegaEff, 0.828)) * (1 + b1_zd * pow(OmegaEff, b2_zd));
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double z_d = 1291 * pow(OmegaEff, 0.251) / (1 + 0.659 * pow(OmegaEff, 0.828)) * (1 + b1_zd * pow(OMEGA_B*h*h, b2_zd));
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double R_d = 31.5 * OMEGA_B * h * h * pow(Theta_27, -4) * 1e3 / z_d;
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double Req = 31.5 * OMEGA_B * h * h * pow(Theta_27, -4) * 1e3 / z_eq;
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@ -180,7 +182,10 @@ double CosmoPower::powerHuWiggles(double k)
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double q = k / (13.41 * k_eq);
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double T_c = f * T_tilde_0(q, 1, beta_c) + (1 - f) * T_tilde_0(q, alpha_c, beta_c);
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double T_b = (T_tilde_0(q, 1, 1) / (1 + pow(k * s / 5.2, 2)) + alpha_b / (1 + pow(beta_b / (k * s), 3)) * exp(-pow(k/k_silk, 1.4))) * j_0(k * s_tilde);
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double T_b = (
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T_tilde_0(q, 1, 1) / (1 + pow(xx / 5.2, 2)) +
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alpha_b / (1 + pow(beta_b / xx, 3)) * exp(-pow(k/k_silk, 1.4))
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) * j_0(k * s_tilde);
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double T_k = OMEGA_B/OMEGA_0 * T_b + OMEGA_C/OMEGA_0 * T_c;
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@ -262,16 +267,18 @@ double CosmoPower::integrandNormalize(double x)
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return power(k)*k*k*f*f/(x*x);
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}
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void CosmoPower::normalize(double k_max)
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void CosmoPower::normalize(double k_min, double k_max)
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{
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double normVal = 0;
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double abserr;
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gsl_integration_workspace *w = gsl_integration_workspace_alloc(NUM_ITERATION);
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gsl_function f;
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double x_min = 0;
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double x_min = 0, x_max = 1;
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if (k_max > 0)
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x_min = 1/(1+k_max);
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if (k_min > 0)
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x_max = 1/(1+k_min);
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f.function = gslPowSpecNorm;
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f.params = this;
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@ -281,12 +288,12 @@ void CosmoPower::normalize(double k_max)
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ofstream ff("PP_k.txt");
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for (int i = 0; i < 100; i++)
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{
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double k = pow(10.0, 4.0*i/100.-2);
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double k = pow(10.0, 8.0*i/100.-4);
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ff << k << " " << power(k) << endl;
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}
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// gsl_integration_qagiu(&f, 0, 0, TOLERANCE, NUM_ITERATION, w, &normVal, &abserr);
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gsl_integration_qag(&f, x_min, 1, 0, TOLERANCE, NUM_ITERATION, GSL_INTEG_GAUSS61, w, &normVal, &abserr);
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gsl_integration_qag(&f, x_min, x_max, 0, TOLERANCE, NUM_ITERATION, GSL_INTEG_GAUSS61, w, &normVal, &abserr);
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gsl_integration_workspace_free(w);
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normVal /= (2*M_PI*M_PI);
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@ -371,5 +378,5 @@ void CosmoPower::setFunction(CosmoFunction f)
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void CosmoPower::setNormalization(double A_K)
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{
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normPower = A_K/power(0.002);
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normPower = A_K;///power(0.002);
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}
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@ -92,7 +92,7 @@ namespace CosmoTool {
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void updateCosmology();
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void updatePhysicalCosmology();
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void normalize(double k_max = -1);
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void normalize(double k_min = -1, double k_max = -1);
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void setNormalization(double A_K);
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void updateHuWigglesConsts();
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