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Upgrade dependencies. Port to python3

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This commit is contained in:
Guilhem Lavaux 2017-12-19 12:04:03 +01:00
parent 14f6062ccb
commit 9389a30379
2 changed files with 11 additions and 5 deletions
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14
external/external_build.cmake vendored
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@ -6,7 +6,7 @@ SET(FFTW_URL "http://www.fftw.org/fftw-3.3.3.tar.gz" CACHE URL "URL to download
SET(EIGEN_URL "http://bitbucket.org/eigen/eigen/get/3.2.10.tar.gz" CACHE URL "URL to download Eigen from") SET(EIGEN_URL "http://bitbucket.org/eigen/eigen/get/3.2.10.tar.gz" CACHE URL "URL to download Eigen from")
SET(GENGETOPT_URL "ftp://ftp.gnu.org/gnu/gengetopt/gengetopt-2.22.5.tar.gz" CACHE STRING "URL to download gengetopt from") SET(GENGETOPT_URL "ftp://ftp.gnu.org/gnu/gengetopt/gengetopt-2.22.5.tar.gz" CACHE STRING "URL to download gengetopt from")
SET(HDF5_URL "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.18/src/hdf5-1.8.18.tar.gz" CACHE STRING "URL to download HDF5 from") SET(HDF5_URL "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.18/src/hdf5-1.8.18.tar.gz" CACHE STRING "URL to download HDF5 from")
SET(NETCDF_URL "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.tar.gz" CACHE STRING "URL to download NetCDF from") SET(NETCDF_URL "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.5.0.tar.gz" CACHE STRING "URL to download NetCDF from")
SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz" CACHE STRING "URL to download NetCDF-C++ from") SET(NETCDFCXX_URL "https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz" CACHE STRING "URL to download NetCDF-C++ from")
SET(BOOST_URL "http://sourceforge.net/projects/boost/files/boost/1.61.0/boost_1_61_0.tar.gz/download" CACHE STRING "URL to download Boost from") SET(BOOST_URL "http://sourceforge.net/projects/boost/files/boost/1.61.0/boost_1_61_0.tar.gz/download" CACHE STRING "URL to download Boost from")
SET(GSL_URL "ftp://ftp.gnu.org/gnu/gsl/gsl-1.15.tar.gz" CACHE STRING "URL to download GSL from ") SET(GSL_URL "ftp://ftp.gnu.org/gnu/gsl/gsl-1.15.tar.gz" CACHE STRING "URL to download GSL from ")
@ -93,9 +93,11 @@ if (INTERNAL_HDF5)
SET(HDF5_ROOTDIR ${HDF5_BIN_DIR}) SET(HDF5_ROOTDIR ${HDF5_BIN_DIR})
SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${HDF5_BIN_DIR}/lib") SET(CONFIGURE_LDFLAGS "${CONFIGURE_LDFLAGS} -L${HDF5_BIN_DIR}/lib")
SET(CONFIGURE_LIBS "${CONFIGURE_LIBS} -ldl") SET(CONFIGURE_LIBS "${CONFIGURE_LIBS} -ldl")
set(HDF5_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5.a CACHE STRING "HDF5 lib" FORCE) set(HDF5_C_STATIC_LIBRARY ${HDF5_BIN_DIR}/lib/libhdf5-static.a)
set(HDF5_HL_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_hl.a CACHE STRING "HDF5 HL lib" FORCE) set(HDF5_HL_STATIC_LIBRARY ${HDF5_BIN_DIR}/lib/libhdf5_hl-static.a)
set(HDF5_CXX_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_cpp.a CACHE STRING "HDF5 C++ lib" FORCE) set(HDF5_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5-static.a CACHE STRING "HDF5 lib" FORCE)
set(HDF5_HL_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_hl-static.a CACHE STRING "HDF5 HL lib" FORCE)
set(HDF5_CXX_LIBRARIES ${HDF5_BIN_DIR}/lib/libhdf5_cpp-static.a CACHE STRING "HDF5 C++ lib" FORCE)
SET(HDF5_INCLUDE_DIRS ${HDF5_BIN_DIR}/include CACHE STRING "HDF5 include path" FORCE) SET(HDF5_INCLUDE_DIRS ${HDF5_BIN_DIR}/include CACHE STRING "HDF5 include path" FORCE)
mark_as_advanced(HDF5_LIBRARIES HDF5_CXX_LIBRARIES HDF5_INCLUDE_DIRS) mark_as_advanced(HDF5_LIBRARIES HDF5_CXX_LIBRARIES HDF5_INCLUDE_DIRS)
@ -114,6 +116,7 @@ else (INTERNAL_HDF5)
cmessage(STATUS "HDF5 lib: ${HDF5_LIBRARIES}") cmessage(STATUS "HDF5 lib: ${HDF5_LIBRARIES}")
cmessage(STATUS "HDF5 includes: ${HDF5_INCLUDE_DIRS}") cmessage(STATUS "HDF5 includes: ${HDF5_INCLUDE_DIRS}")
cmessage(STATUS "HDF5 C lib: ${HDF5_C_LIBRARY}") cmessage(STATUS "HDF5 C lib: ${HDF5_C_LIBRARY}")
cmessage(STATUS "HDF5 HL lib: ${HDF5_HL_LIBRARY}")
cmessage(STATUS "HDF5 BIN: ${HDF5_BIN_DIR}") cmessage(STATUS "HDF5 BIN: ${HDF5_BIN_DIR}")
foreach(hdf5lib IN LISTS HDF5_LIBRARIES) foreach(hdf5lib IN LISTS HDF5_LIBRARIES)
if (${hdf5lib} MATCHES "(hdf5)|(HDF5)") if (${hdf5lib} MATCHES "(hdf5)|(HDF5)")
@ -167,6 +170,9 @@ if (INTERNAL_NETCDF)
-DENABLE_NETCDF4=ON -DENABLE_NETCDF4=ON
-DENABLE_DAP=OFF -DENABLE_DAP=OFF
-DCMAKE_INSTALL_PREFIX=${NETCDF_BIN_DIR} -DCMAKE_INSTALL_PREFIX=${NETCDF_BIN_DIR}
-DHDF5_C_LIBRARY=${HDF5_C_STATIC_LIBRARY}
-DHDF5_HL_LIBRARY=${HDF5_HL_STATIC_LIBRARY}
-DHDF5_INCLUDE_DIR=${HDF5_INCLUDE_DIRS}
) )
SET(NETCDFCXX_SOURCE_DIR ${BUILD_PREFIX}/netcdf-c++-prefix/src/netcdf-c++) SET(NETCDFCXX_SOURCE_DIR ${BUILD_PREFIX}/netcdf-c++-prefix/src/netcdf-c++)

2
python/_cosmotool.pyx
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@ -452,7 +452,7 @@ def loadParallelGadget(object filename_list, int gadgetFormat = 1, bool loadPosi
filenames.resize(num_files) filenames.resize(num_files)
data = alloc_simudata(num_files) data = alloc_simudata(num_files)
for i,l in enumerate(filename_list): for i,l in enumerate(filename_list):
filenames[i] = l filenames[i] = l.encode('utf-8')
with nogil: with nogil:
for i in prange(num_files): for i in prange(num_files):