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Fixed cic. Fixed lpt1 evaluation in cosmogrowth

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This commit is contained in:
Guilhem Lavaux 2014-06-03 10:48:54 +02:00
parent 4bc7bf47a7
commit 7662ea98d4
4 changed files with 28 additions and 16 deletions
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31
python/cosmotool/cic.py
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@ -3,18 +3,25 @@ import numpy as np
def cicParticles(particles, L, N): def cicParticles(particles, L, N):
def shifted(i, t):
return (i[2]+t[2])%N + N*((i[1]+t[1])%N + N*((i[0]+t[0])%N))
i =[]
r = []
for d in xrange(3): for d in xrange(3):
q = particles[d]*N/L q = (particles[d]%L)*N/L
i.append(np.floor(q).astype(int)) o = np.floor(q).astype(int)
r.append(q-i[-1]) i.append(o)
r.append(q-o)
density = np.bincount(shifted(i, (0,0,0)), weights= r[0]* r[1]* r[2], minlength=N*N*N) density = np.bincount(shifted(i, (1,1,1)), weights= r[0] * r[1] * r[2], minlength=N*N*N)
density += np.bincount(shifted(i, (0,0,1)), weights= r[0]* r[1]*(1-r[2]), minlength=N*N*N) density += np.bincount(shifted(i, (1,1,0)), weights= r[0] * r[1] *(1-r[2]), minlength=N*N*N)
density += np.bincount(shifted(i, (0,1,0)), weights= r[0]*(1-r[1])* r[2], minlength=N*N*N) density += np.bincount(shifted(i, (1,0,1)), weights= r[0] *(1-r[1])* r[2], minlength=N*N*N)
density += np.bincount(shifted(i, (0,1,1)), weights= r[0]*(1-r[1])*(1-r[2]), minlength=N*N*N) density += np.bincount(shifted(i, (1,0,0)), weights= r[0] *(1-r[1])*(1-r[2]), minlength=N*N*N)
density += np.bincount(shifted(i, (1,0,0)), weights=(1-r[0])* r[1]* r[2], minlength=N*N*N) density += np.bincount(shifted(i, (0,1,1)), weights=(1-r[0])* r[1] * r[2], minlength=N*N*N)
density += np.bincount(shifted(i, (1,0,1)), weights=(1-r[0])* r[1]*(1-r[2]), minlength=N*N*N) density += np.bincount(shifted(i, (0,1,0)), weights=(1-r[0])* r[1] *(1-r[2]), minlength=N*N*N)
density += np.bincount(shifted(i, (1,1,0)), weights=(1-r[0])*(1-r[1])* r[2], minlength=N*N*N) density += np.bincount(shifted(i, (0,0,1)), weights=(1-r[0])*(1-r[1])* r[2], minlength=N*N*N)
density += np.bincount(shifted(i, (1,1,1)), weights=(1-r[0])*(1-r[1])*(1-r[2]), minlength=N*N*N) density += np.bincount(shifted(i, (0,0,0)), weights=(1-r[0])*(1-r[1])*(1-r[2]), minlength=N*N*N)
return density return density.reshape((N,N,N))

3
python_sample/icgen/borgicgen.py
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@ -34,6 +34,7 @@ def compute_power_from_borg(input_borg, a_borg, cosmo, bins=10, range=(0,1)):
cgrowth = CosmoGrowth(**cosmo) cgrowth = CosmoGrowth(**cosmo)
D1 = cgrowth.D(1) D1 = cgrowth.D(1)
D1_0 = D1/cgrowth.D(a_borg) D1_0 = D1/cgrowth.D(a_borg)
print("D1_0=%lg" % D1_0)
density_hat, L = ba.half_pixel_shift(borg_vol) density_hat, L = ba.half_pixel_shift(borg_vol)
@ -76,7 +77,7 @@ def run_generation(input_borg, a_borg, a_ic, **cosmo):
for j in xrange(3): for j in xrange(3):
# Generate psi_j (displacement along j) # Generate psi_j (displacement along j)
psi = D1_0*lpt.lpt1(j).flatten()*(N/L)**3 psi = D1_0*lpt.lpt1(j).flatten()
# Generate posx # Generate posx
posx.append(((posq[j] + psi)%L).astype(np.float32)) posx.append(((posq[j] + psi)%L).astype(np.float32))
# Generate vel # Generate vel

2
python_sample/icgen/cosmogrowth.py
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@ -57,7 +57,7 @@ class LagrangianPerturbation(object):
k2 = self._get_k2() k2 = self._get_k2()
k2[0,0,0] = 1 k2[0,0,0] = 1
return self._gradient(-self.dhat/k2, direction) return self._gradient(self.dhat/k2, direction)
def new_shape(self,direction, q=3, half=False): def new_shape(self,direction, q=3, half=False):
N0 = (self.N/2+1) if half else self.N N0 = (self.N/2+1) if half else self.N

4
python_sample/icgen/gen_ic_from_borg.py
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@ -10,5 +10,9 @@ cosmo['SIGMA8']=0.8344
zstart=0 zstart=0
astart=1/(1.+zstart) astart=1/(1.+zstart)
pos,_,density,N,L,_ = bic.run_generation("initial_condition_borg.dat", 0.001, astart, **cosmo)
dcic = ct.cicParticles(pos, L, N)
#if __name__=="__main__": #if __name__=="__main__":
# bic.write_icfiles(*bic.run_generation("initial_condition_borg.dat", 0.001, astart, **cosmo), **cosmo) # bic.write_icfiles(*bic.run_generation("initial_condition_borg.dat", 0.001, astart, **cosmo), **cosmo)