Removed support for loadGadgetPosition. Added attribute support to SimuData.

src/loadGadget.cpp

@@ -10,61 +10,41 @@
 using namespace CosmoTool;
 using namespace std;
 
-PurePositionData *CosmoTool::loadGadgetPosition(const char *fname)
+
+void loadGadgetHeader(UnformattedRead *f, GadgetHeader& h, SimuData *data, int id)
 {
-  PurePositionData *data;
+  f->beginCheckpoint();
-  int p, n;
-  UnformattedRead f(fname);
-  GadgetHeader h;
-  
-  data = new PurePositionData;
-  f.beginCheckpoint();
   for (int i = 0; i < 6; i++)
-    h.npart[i] = f.readInt32();
+    h.npart[i] = f->readInt32();
   for (int i = 0; i < 6; i++)    
-    h.mass[i] = f.readReal64();
+    h.mass[i] = f->readReal64();
-  h.time = f.readReal64();
+  data->time = h.time = f->readReal64();
-  h.redshift = f.readReal64();
+  h.redshift = f->readReal64();
-  h.flag_sfr = f.readInt32();
+  h.flag_sfr = f->readInt32();
-  h.flag_feedback = f.readInt32();
+  h.flag_feedback = f->readInt32();
   for (int i = 0; i < 6; i++)
-    h.npartTotal[i] = f.readInt32();
+    h.npartTotal[i] = f->readInt32();
-  h.flag_cooling = f.readInt32();
+  h.flag_cooling = f->readInt32();
-  h.num_files = f.readInt32();
+  h.num_files = f->readInt32();
-  data->BoxSize = h.BoxSize = f.readReal64();
+  data->BoxSize = h.BoxSize = f->readReal64();
-  h.Omega0 = f.readReal64();
+  data->Omega_M = h.Omega0 = f->readReal64();
-  h.OmegaLambda = f.readReal64();
+  data->Omega_Lambda = h.OmegaLambda = f->readReal64();
-  h.HubbleParam = f.readReal64();
+  data->Hubble = h.HubbleParam = f->readReal64();
-  f.endCheckpoint(true);
+  f->endCheckpoint(true);
   
-  data->NumPart = 0;
+  long NumPart = 0, NumPartTotal = 0;
-  for(int k=0; k<5; k++)
+  for(int k=0; k<6; k++)
-    data->NumPart += h.npart[k];
+    {
-  
+      NumPart += h.npart[k];
-  data->pos = new FCoordinates[data->NumPart];
+      NumPartTotal += (id < 0) ? h.npart[k] : h.npartTotal[k];
-  
-  f.beginCheckpoint();
-  for(int k = 0, p = 0; k < 5; k++) {
-    for(int n = 0; n < h.npart[k]; n++) {
-      data->pos[p][0] = f.readReal32();
-      data->pos[p][1] = f.readReal32();
-      data->pos[p][2] = f.readReal32();
-      p++;
     }
-  }
+  data->NumPart = NumPart;
-  f.endCheckpoint();
+  data->TotalNumPart = NumPartTotal;
-  
-  // Skip velocities
-  f.skip((long)data->NumPart*3+2*4);
-  // Skip ids
-
-  return data;
 }
 
-
+SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id,
-
+				     int loadflags, int GadgetFormat, 
-
+				     SimuFilter filter)
-SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id, int loadflags, int GadgetFormat)
 {
   SimuData *data;
   int p, n;
@@ -101,32 +81,8 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id, int loadflags, i
   
   try
     {
-      f->beginCheckpoint();
+      loadGadgetHeader(f, h, data, id);
-      for (int i = 0; i < 6; i++)
-	h.npart[i] = f->readInt32();
-      for (int i = 0; i < 6; i++)    
-	h.mass[i] = f->readReal64();
-      data->time = h.time = f->readReal64();
-      h.redshift = f->readReal64();
-      h.flag_sfr = f->readInt32();
-      h.flag_feedback = f->readInt32();
-      for (int i = 0; i < 6; i++)
-	h.npartTotal[i] = f->readInt32();
-      h.flag_cooling = f->readInt32();
-      h.num_files = f->readInt32();
-      data->BoxSize = h.BoxSize = f->readReal64();
-      data->Omega_M = h.Omega0 = f->readReal64();
-      data->Omega_Lambda = h.OmegaLambda = f->readReal64();
-      data->Hubble = h.HubbleParam = f->readReal64();
-      f->endCheckpoint(true);
 
-      for(int k=0; k<6; k++)
-	{
-	  NumPart += h.npart[k];
-	  NumPartTotal += (id < 0) ? h.npart[k] : h.npartTotal[k];
-	}
-      data->NumPart = NumPart;
-      data->TotalNumPart = NumPartTotal;
       if (GadgetFormat == 1)
         velmul = sqrt(h.time);
       else if (GadgetFormat == 2)
@@ -135,6 +91,9 @@ SimuData *CosmoTool::loadGadgetMulti(const char *fname, int id, int loadflags, i
         cerr << "unknown gadget format" << endl;
 	abort();
       }
+
+      NumPart = data->NumPart;
+      NumPartTotal = data->TotalNumPart;
     }
   catch (const InvalidUnformattedAccess& e)
     {

src/loadGadget.hpp

@@ -6,9 +6,8 @@
 
 namespace CosmoTool {
 
-  PurePositionData *loadGadgetPosition(const char *fname);
+  SimuData *loadGadgetMulti(const char *fname, int id, int flags, 
-
+			    int GadgetFormat = 1, SimuFilter filter = 0);
-  SimuData *loadGadgetMulti(const char *fname, int id, int flags, int GadgetFormat = 1);
  
   // Only single snapshot supported
   void writeGadget(const char *fname, SimuData *data, int GadgetFormat = 1);

src/loadSimu.hpp

@@ -1,6 +1,8 @@
 #ifndef __COSMOTOOLBOX_HPP
 #define __COSMOTOOLBOX_HPP
 
+#include <map>
+#include <string>
 
 namespace CosmoTool
 {
@@ -9,9 +11,24 @@ namespace CosmoTool
   static const int NEED_VELOCITY = 4;
   static const int NEED_TYPE = 8;
 
+  struct SimuParticle
+  {
+    float Pos[3];
+    float Vel[3];
+    int type;
+    int id;
+
+    bool flag_vel, flag_type, flag_id;
+  };
+
+  typedef bool (*SimuFilter)(const SimuParticle& p);
+
   class SimuData 
   {
   public:
+    typedef void (*FreeFunction)(void *);
+    typedef std::map<std::string, std::pair<void *, FreeFunction> > AttributeMap;
+
     float BoxSize;
     float time;
     float Hubble;
@@ -25,6 +42,9 @@ namespace CosmoTool
     float *Pos[3];
     float *Vel[3];
     int *type;
+
+    AttributeMap attributes;
+    
   public:
     SimuData() : Id(0),NumPart(0),type(0)  { Pos[0]=Pos[1]=Pos[2]=0; Vel[0]=Vel[1]=Vel[2]=0; }
     ~SimuData() 
@@ -40,7 +60,37 @@ namespace CosmoTool
 	delete[] type;
       if (Id)
 	delete[] Id;
+
+      for (AttributeMap::iterator i = attributes.begin();
+	   i != attributes.end();
+	   ++i)
+	{
+	  if (i->second.second)
+	    i->second.second(i->second.first);
 	}
+    }    
+    
+    template<typename T>
+    T *as(const std::string& n) 
+    {
+      AttributeMap::iterator i = attributes.find(n);
+      if (i == attributes.end())
+	return 0;
+      
+      return reinterpret_cast<T *>(i->first);
+    }
+
+    void new_attribute(const std::string& n, void *p, FreeFunction free_func)
+    {
+      AttributeMap::iterator i = attributes.find(n);
+      if (i != attributes.end())
+	{
+	  if (i->second.second)
+	    i->second.second(i->second.first);
+	}
+      attributes[n] = std::make_pair(p, free_func);
+    }
+    
   };
 
 };